View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_18 (Length: 504)
Name: NF1379_low_18
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 121 - 378
Target Start/End: Complemental strand, 28632067 - 28631808
Alignment:
| Q |
121 |
attcaagttatgaattaaaatttccgtaa-cacaaaagttatgaattagaattcggccttgtttaaagaccgtaaacataattaaaggaactatatataa |
219 |
Q |
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| T |
28632067 |
attcaagttatgaattaaaatttccgtaaacagaaaagttatgaattagaattcggccttgtttaaagaccgtaaacataattaaaggaactatatataa |
28631968 |
T |
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| Q |
220 |
atacaaatactttaagtagagtagaataattactt-cnnnnnnnnnngtagagtagaaattttttgagaggctgcgttttgaccctctttgtaataatat |
318 |
Q |
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| T |
28631967 |
atacaaatactttaagtagagtagaataattacttaaaaaaaaaaaagtagagtagaaattttttgagaggctgcgttttgaccctctttgtaataatat |
28631868 |
T |
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| Q |
319 |
nnnnnnnggaactgtaaacttatgtctttaaaacacaagttaaaaacctaaagatagaag |
378 |
Q |
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| T |
28631867 |
aaaaaagagaaccgtaaacttatatctttaaaacacaaattaaaaacttaaagatagaag |
28631808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 28632140 - 28632090
Alignment:
| Q |
83 |
tttcttactaaaaatacatatatctaaacgagttgaatattcaagttatga |
133 |
Q |
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| T |
28632140 |
tttcttactaaaaatacatatatctaaacgagttgaatattcaagttatga |
28632090 |
T |
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