View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_19 (Length: 500)
Name: NF1379_low_19
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_19 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 142 - 368
Target Start/End: Original strand, 6582 - 6807
Alignment:
| Q |
142 |
ctaggtacttggttaacttcaacacgtctggcaggtacttgggtagattcatcaccttgactggatacttgggtagctctaacacctttggtaggcactt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
6582 |
ctaggtacttggttaacttcaacacgtctggcaggtacttgg-tagcttcatcaccttgactagatacttgggtagctctaacaccttgggtaggcactt |
6680 |
T |
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| Q |
242 |
ggctgccactactcccttccataaaatcaggccaaaatgcactatcattatttaataagtccttgatacgacgatcataacgattacattcagcataaac |
341 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
6681 |
ggctgccgctactcccttccataaaatcaggccaaaatgcactatcattatttaataagtccttgatacgaggatcataacaattatattcagcataaac |
6780 |
T |
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| Q |
342 |
atcctctccactctcataatgattcat |
368 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6781 |
atcctctccactctcataatgattcat |
6807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 142 - 368
Target Start/End: Complemental strand, 53440315 - 53440090
Alignment:
| Q |
142 |
ctaggtacttggttaacttcaacacgtctggcaggtacttgggtagattcatcaccttgactggatacttgggtagctctaacacctttggtaggcactt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
53440315 |
ctaggtacttggttaacttcaacacgtctggcaggtacttgg-tagcttcatcaccttgactagatacttgggtagctctaacaccttgggtaggcactt |
53440217 |
T |
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| Q |
242 |
ggctgccactactcccttccataaaatcaggccaaaatgcactatcattatttaataagtccttgatacgacgatcataacgattacattcagcataaac |
341 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
53440216 |
ggctgccgctactcccttccataaaatcaggccaaaatgcactatcattatttaataagtccttgatacgaggatcataacaattatattcagcataaac |
53440117 |
T |
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| Q |
342 |
atcctctccactctcataatgattcat |
368 |
Q |
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||||||||||||||||||||||||||| |
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| T |
53440116 |
atcctctccactctcataatgattcat |
53440090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 146 - 368
Target Start/End: Complemental strand, 42999218 - 42998999
Alignment:
| Q |
146 |
gtacttggttaacttcaacacgtctggcaggtacttgggtagattcatcaccttgactggatacttgggtagctctaacacctttggtaggcacttggct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
42999218 |
gtacttggttaacttcaacacgtctggcaggtacttgggtagcttcatcaccttgactagatacttgggtagctctaacaccttgggtaggcacttggcc |
42999119 |
T |
|
| Q |
246 |
gccactactcccttccataaaatcaggccaaaatgcactatcattatttaataagtccttgatacgacgatcataacgattacattcagcataaacatcc |
345 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
42999118 |
gc---tactcccttccataaaatcaggccaaaatgcactatcattatttaataagtccttgatacgaggatcataacgattatattcagcataaacatcc |
42999022 |
T |
|
| Q |
346 |
tctccactctcataatgattcat |
368 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
42999021 |
tttccactctcataatgattcat |
42998999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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