View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_20 (Length: 499)
Name: NF1379_low_20
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 39664409 - 39664855
Alignment:
| Q |
13 |
aatattgtagagaacttcagttaaatg------gtgcaacctcaatcacaaacatgttgtggttgcagaaacatcaaaatcatggattcaataacagtgt |
106 |
Q |
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| T |
39664409 |
aatattgtagagaacttcagttaaatgtagttggtgcaacctcaatcacaaacatgttgtggttgcagaaacatcaaaatcatggattcaataacagtgt |
39664508 |
T |
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| Q |
107 |
agttgtattgtatcaaggataaacccacaagaaaataacctcaaaattcgaagtatggtttcaatattcaagtatggtgggtggataaccgcaaaatttg |
206 |
Q |
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| T |
39664509 |
agttgtattgtatcaaggataaacccacaagaaaataacctcaaaattcgaagtatggtttcaatattgaagtat----ggtggataaccgcaaaatttg |
39664604 |
T |
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| Q |
207 |
cttttttattaattttcaatgctatgtccggtgaaagactcattaaatggaacagtagtaatcattcttacatcattcttaaaattgatggtagttgtct |
306 |
Q |
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| T |
39664605 |
cttttttattaa-tttcaatgctatgtctggtgaaagactcattaaatggaacaatagta-----------atcattcttaacattgatggtagttgtct |
39664692 |
T |
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| Q |
307 |
agacttgcccgttagagccggctacggtggggttattagaaatagtgtcggttattattt-ttgggttttttaggctacattcaagaatcatttgacacc |
405 |
Q |
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| T |
39664693 |
agacttgcccgttagagccggctacggtaggattattagaaatagtgtcggttattatttattgggttttttaggctacattcaagaatcatttgacacc |
39664792 |
T |
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| Q |
406 |
ctttatgtcgagttatttgctatttatcaaggtatcttattaacagaaaaaaggggggattgaag |
470 |
Q |
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| T |
39664793 |
ctttatgccgaattatttgctatttatcaa-gtatcttattaaca-aaaaaagaggggattgaag |
39664855 |
T |
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