View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_21 (Length: 490)
Name: NF1379_low_21
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 139 - 461
Target Start/End: Original strand, 20714264 - 20714586
Alignment:
| Q |
139 |
aggttgtcaagctcacaagtggcacgtctcgttcttattcgtatctatccaaaggagacagaagtttggctgccatcaagattcaaagtgtctaccgtgc |
238 |
Q |
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| T |
20714264 |
aggttgtcaagctcacaagtggcacgtctcgttcttattcgtatctatccaagggagacagaagtttggctgccatcaagattcaaagtgtataccgtgc |
20714363 |
T |
|
| Q |
239 |
gcatcttgtgagcttcctacaacctgtttcttcttttgtagtattcatcattgaattctgagtatggtttaatattttaggtttgttgttaccaagagat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20714364 |
gcatcttgtgagcttcctacaacctgtttcttcttttgtagtattcatcattgaattctgagtatggtttaatattttaggtttgttgttaccaagagat |
20714463 |
T |
|
| Q |
339 |
ttacattaagattggtttcacttgatcttgaattctaaattggtaaaaacaggctaggaaagcattaagagcattgaagggagtgataagacttcaagcc |
438 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20714464 |
ttacattaagattggtttcacttaatcttgaattctaaattggtaaaaacaggctaggaaagcattaagagcattgaagggagtgataagacttcaagcc |
20714563 |
T |
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| Q |
439 |
ataattcgcggtgaagctgttag |
461 |
Q |
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||||||||||||||||||||||| |
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| T |
20714564 |
ataattcgcggtgaagctgttag |
20714586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 20714182 - 20714232
Alignment:
| Q |
57 |
cagagaaagcatgcattggctgtggctattgcaacagcatctgcagcagaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20714182 |
cagagaaagcatgcattggctgtggctattgcaacagcatctgcagcagaa |
20714232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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