View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_23 (Length: 484)
Name: NF1379_low_23
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 74 - 475
Target Start/End: Complemental strand, 17889551 - 17889153
Alignment:
| Q |
74 |
aactatttggttcgtcgaagcttgaatccagttacaaaagtgttggagtattgtttagaagacatttctaatgtttacccttgtcatgaagggttggtta |
173 |
Q |
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| T |
17889551 |
aactatttggttcgtcgaagcttgaatccggttacaaaagtgttggagtattgtttagaagacatttctaatgtttacccttgtcatgaagggttggtta |
17889452 |
T |
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| Q |
174 |
tgnnnnnnnnnnnnnnnnnnnataaagttaaggacaagtacaagatcacaagggggcaacttatgaaggacatgatttgtttgtataagtatatacttat |
273 |
Q |
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| T |
17889451 |
tgagtagtagtagtagta---ataaagttaaggacaagtacaagatcacaagggggcaacttatgaaggacatgatttgtttgtataagtatatacttat |
17889355 |
T |
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| Q |
274 |
tgacacaaaaccaattatagggttagaatttctttcagctataccattggcagctaggataattcttgacactaaacatcttatcaaagactatggagag |
373 |
Q |
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| T |
17889354 |
tgacacaaaaccaattatagggtcagaatttctttcagctataccattggcagctaggataattcttgacactaaacatcttatcaaagactatggagag |
17889255 |
T |
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| Q |
374 |
gttcctctgcaagttgagttaggatcaaaagaaaaatgcaatctttattgtacaattttgttaaggaatgttaacaatttagggcatgatcatgagtatt |
473 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
17889254 |
gttcctttgcaagttgagttaggatcaaaagaaaaatgcaatctttattgtacaattttgttaaggaatgttaacaatgtaggccataatcatgagtatt |
17889155 |
T |
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