View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_24 (Length: 462)
Name: NF1379_low_24
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Original strand, 54280634 - 54281064
Alignment:
| Q |
30 |
tttatcttaataatttcattaagttttacgacatgaaagagggtggcttttaggaaatgagaatggatggaaaagttggacttggaacataaattttgtt |
129 |
Q |
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| T |
54280634 |
tttatcttaataatttcattaagttttacgacatgaaaaagggtggcttttaggaaatgggaatggatggaaaagttggatttggaacataaattttgtt |
54280733 |
T |
|
| Q |
130 |
tccctgccttctctctatttttcatgtgtcatgaagtgaagattatgaaactaaaacacttcattgtgcaccaaacaaaatatctccaatgtctagtgta |
229 |
Q |
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| T |
54280734 |
tccctgccttctctctatttttcatgtgtcatgaagtgaagattatgaaactaaaacacttcattgtgcaccaaacaaaatatctccaatgtctagtgta |
54280833 |
T |
|
| Q |
230 |
gttaatatatatcatgtagctcaagtaggtaacatatattgctttccgatttccatgttcgtataggatgatgccctttaaaccattttgatatcacgca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
54280834 |
gttaatatatatcatgtagctcaagtaggtaacatatattgctttccgatttccatgttcgtataggatgatgccctttaaaccgttttgatatcactca |
54280933 |
T |
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| Q |
330 |
tcaagtatgagtagaaatttcttacaacaaactcgaaaagagtttgcctttaccttgcctatcttatgaattatcaatcatcaacttatcacacaattga |
429 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54280934 |
tcaagtatgagtagaaatgtcttacaacaaactcgaaaagagtttgcctttaccctgcctatcttatgaattatcaatcatcaacttatcacacaattga |
54281033 |
T |
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| Q |
430 |
gtgtggtccttaatcttttcttctctctcga |
460 |
Q |
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| T |
54281034 |
gtgtggtccttaatctttttttctctctcga |
54281064 |
T |
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