View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_27 (Length: 458)
Name: NF1379_low_27
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 30 - 449
Target Start/End: Original strand, 1883432 - 1883862
Alignment:
| Q |
30 |
tgttgaacccattttgcctaaaagaaataaaataattacaggctttaattagtataannnnnnnnnnnnnctacctattttcccaccctttcgttccttc |
129 |
Q |
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| T |
1883432 |
tgttgaacccattttgcctaaaagaaataaaataattacaggctttaatttctatagtttttaattttttctacctatttttccacccttctgttccttc |
1883531 |
T |
|
| Q |
130 |
aattggctaaagaaataatcaaataaaatcatttttaaaactatcttcttcnnnnnnnnn---gacaaaaaagaaactatatatttgaatgctataggtt |
226 |
Q |
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| T |
1883532 |
aattggctaaagaaataatcaaataaaataatttttaaaactatcttctttttttttttttttgacaaaaaagaaactatatatttgaatgctataggtt |
1883631 |
T |
|
| Q |
227 |
catttgcaaaaattattttatgaagatgctaaatctaaattattatagcaacgaaggtgtcattttcactgttgtttgtataa-tatatcatgaacctaa |
325 |
Q |
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| T |
1883632 |
catttgcaaaaattattttatgaagatgctaaatctaaattattatagaaacgaaggtgtcattttcaccgttgtttgtataattatatcatgaacctaa |
1883731 |
T |
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| Q |
326 |
tatgggcccaatttttcatgcaaatggtagcaacataatactaactaattaacaaaatgtttgagatattatgccaacacca-------tcatgagtaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
1883732 |
tatgggcccaatttttcatgcaaatggtagcaacataatactaactaattaacaaaatgtttgatatattatgccaacaccatcatgactcatgagtaac |
1883831 |
T |
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| Q |
419 |
attactaataacaatataatagtaagcaagt |
449 |
Q |
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|| ||||| |||||||||||||||||||||| |
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| T |
1883832 |
atgactaaaaacaatataatagtaagcaagt |
1883862 |
T |
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