View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_28 (Length: 457)
Name: NF1379_low_28
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 108 - 449
Target Start/End: Complemental strand, 37842869 - 37842528
Alignment:
| Q |
108 |
ataccattgctttagatctttcgtatctgattccattctatggaaacgccttcgaattattattaccagcacaacagaaatcaatatagaggatcctatt |
207 |
Q |
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| T |
37842869 |
ataccattgctttagatcttccgtatctgattcctttctaaggaaacgcctttgaattattattaccagcacaacagaaatcaatatagaggatccaatt |
37842770 |
T |
|
| Q |
208 |
tcaatcatcacaatttgaacattactgatacctttgtgattggttgatttggagacacatgaatttacataactagttttaatgcaacttaaacaactga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37842769 |
tcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagacacatggatttacataactagttttaatgcaacttaaacaactga |
37842670 |
T |
|
| Q |
308 |
cacatatgataggattacccatgaatgatgatggtgaggaattcaataacttcaatagacctgttggtatagaaccattgaagagattgtaagaaatatt |
407 |
Q |
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| T |
37842669 |
cacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatatt |
37842570 |
T |
|
| Q |
408 |
aatctcaattaatgaaacaagacttccaagtgcgcctatgct |
449 |
Q |
| |
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| T |
37842569 |
gacctcaattaatgaaacaagacttccaagtgcgtctatgct |
37842528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 158 - 437
Target Start/End: Complemental strand, 37837200 - 37836921
Alignment:
| Q |
158 |
ttcgaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgattt |
257 |
Q |
| |
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|||||| |||||| |||| |||| ||||||||||||| |||||||| | | | ||||| ||||||||||||| |||||||||||| |||| |||||||| |
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| T |
37837200 |
ttcgaaatattatcaccatcacagcagaaatcaatattgaggatccaagtactatcattacaatttgaacataactgatacctttatgatcagttgattt |
37837101 |
T |
|
| Q |
258 |
ggagacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataac |
357 |
Q |
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| ||||||||| |||||||| ||||||| |||||||| | |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
37837100 |
gtagacacatggatttacattactagttataatgcaattcaaacaacttacacataggaaaggattacccatgaatgatgatggtgaggaattcaataac |
37837001 |
T |
|
| Q |
358 |
ttcaatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaagacttccaag |
437 |
Q |
| |
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||| |||||||||||||| ||| ||||||||||||||| |||||||||| | |||||||||||||||||||| |||||| |
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| T |
37837000 |
ctcattagacctgttggtacagatccattgaagagattgaaagaaatattgacctcaattaatgaaacaagacctccaag |
37836921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 161 - 429
Target Start/End: Complemental strand, 28089685 - 28089418
Alignment:
| Q |
161 |
gaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgatttgga |
260 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||| |||||||| | ||| |||||||||||||||||||||| |||| |||| |||| |||||||||| | |
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| T |
28089685 |
gaattattatcaccagcacatcagaaatcaatattgaggatccaagttctatcatcacaatttgaacattaccgataactttatgatcggttgatttgta |
28089586 |
T |
|
| Q |
261 |
gacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataacttc |
360 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || ||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||| || |
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| T |
28089585 |
gacacatggatttacataactagttttaatgcaa-ttcaacaactaaaacatatgagaggattgcccatgaatgatgatggtgaggaattcaataaactc |
28089487 |
T |
|
| Q |
361 |
aatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaaga |
429 |
Q |
| |
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| |||| || ||||| | |||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
28089486 |
attagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctcaattaatgaaacaaga |
28089418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 158 - 437
Target Start/End: Complemental strand, 37831496 - 37831217
Alignment:
| Q |
158 |
ttcgaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgattt |
257 |
Q |
| |
|
||||||| ||||||| || || | ||||||| ||||| |||||||| | ||| |||| ||||||||||||||||| |||||||||||||| ||||| || |
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| T |
37831496 |
ttcgaatcattattagcatcagagcagaaataaatattgaggatccaagttctatcaacacaatttgaacattaccgatacctttgtgatcagttgactt |
37831397 |
T |
|
| Q |
258 |
ggagacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataac |
357 |
Q |
| |
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| ||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||| || |||| |||||||||||||||||||||||||||||| |||| |
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| T |
37831396 |
gtagacacatggatttacataactagtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatggtgaggaattcagtaac |
37831297 |
T |
|
| Q |
358 |
ttcaatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaagacttccaag |
437 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||| ||| || ||| |||| |||||||||||| |||| |
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| T |
37831296 |
ttcattagacctgttggtacagaaccattgaagagattgtaagaaacattgatatcagttaacgaaacaagactttcaag |
37831217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 37850428 - 37850307
Alignment:
| Q |
309 |
acatatgataggattacccatgaatgatgatggtgaggaattcaataacttcaatagacctgttggtatagaaccattgaagagattgtaagaaatatta |
408 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| |||||||||| |
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| T |
37850428 |
acataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattg |
37850329 |
T |
|
| Q |
409 |
atctcaattaatgaaacaagac |
430 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
37850328 |
acctcaattaatgaaacaagac |
37850307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 161 - 430
Target Start/End: Complemental strand, 36865944 - 36865675
Alignment:
| Q |
161 |
gaattattattaccagcacaacagaaatcaatatagaggatcctatttcaatcatcacaatttgaacattactgatacctttgtgattggttgatttgga |
260 |
Q |
| |
|
|||||||||| ||| |||| |||||| ||||| |||| ||| | ||| ||||||||||||||||||||| ||||||||||||||| |||| |||| | |
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| T |
36865944 |
gaattattatcaccgccacaccagaaacaaatattgagggtccaagttctatcatcacaatttgaacattaatgatacctttgtgatcagttggtttgta |
36865845 |
T |
|
| Q |
261 |
gacacatgaatttacataactagttttaatgcaacttaaacaactgacacatatgataggattacccatgaatgatgatggtgaggaattcaataacttc |
360 |
Q |
| |
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|| ||||| ||||| | |||||||||||| |||| | ||||| || ||||||| || ||||||||||||||| ||||| |||||||||||||||||| | |
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| T |
36865844 |
gatacatggatttataaaactagttttaaagcaattcaaacatctaacacataggagaggattacccatgaacgatgacggtgaggaattcaataaccta |
36865745 |
T |
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| Q |
361 |
aatagacctgttggtatagaaccattgaagagattgtaagaaatattaatctcaattaatgaaacaagac |
430 |
Q |
| |
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| ||||| |||||||| |||||||||||| ||||||||| ||||||| | |||||||||||||||||||| |
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|
| T |
36865744 |
attagacgtgttggtacagaaccattgaaaagattgtaataaatattgacctcaattaatgaaacaagac |
36865675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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