View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_29 (Length: 457)
Name: NF1379_low_29
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 30 - 447
Target Start/End: Original strand, 29578725 - 29579142
Alignment:
| Q |
30 |
ccatgctggctcctgcagacaaaatgaagatcgattctgtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgt |
129 |
Q |
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| T |
29578725 |
ccatgctggctcctgcagacaaaatgaagatcgattctgcgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgt |
29578824 |
T |
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| Q |
130 |
gtttgtagactttttaaaggagcttgaaatcatctttgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttaagcaatgaatttacagc |
229 |
Q |
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| T |
29578825 |
gtttgtagactttttaaaggagcttgaaatcatctttgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttgagcaatgaatttacagc |
29578924 |
T |
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| Q |
230 |
atgagttaagtaatgaaggataacagtgttagttccataccgactcttggagacaaagtagtgcaaaaagaaacatgtgtttatggactttatgaaggag |
329 |
Q |
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| T |
29578925 |
atgagttaagtaatgaaggataacagtgttagttccatatcgactcttggagacaaagtagtgcaaaaagaaacatgtgtttatggactttatgaaggag |
29579024 |
T |
|
| Q |
330 |
cttgaaagatcaacaaaagttacatgctctgatgacgaaattgatttggaatattttagttttttatcattttcttatcaatttcagtttcctcatgtac |
429 |
Q |
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| T |
29579025 |
cttgaaagatcaacaaaagttacatgctctgatgacgaaattgatttggaatattttagttttttatcattttcttatcaatttcagtttcctcatgtac |
29579124 |
T |
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| Q |
430 |
ttgatgaagctgtctgtg |
447 |
Q |
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| T |
29579125 |
ttgatgaagctgtttgtg |
29579142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 29582894 - 29583174
Alignment:
| Q |
30 |
ccatgctggctcctgcagacaaaatgaagatcgattctgtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgt |
129 |
Q |
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||||| || ||||||||||||||| |||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||| ||| |
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| T |
29582894 |
ccatggtgactcctgcagacaaaacaaagatcaattctgcaattatgaacggaaaaagtttgattgataatcatggcaaccagcacaaagaagcatgcgt |
29582993 |
T |
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| Q |
130 |
gtttgtagactttttaaaggagcttgaaatcatctttgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttaagcaatga--------- |
220 |
Q |
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|||||| |||||||| ||||||||| || ||||||||| | ||| || || || |||||||||| ||||| ||||| |||||||| |
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| T |
29582994 |
gtttgtggactttttgaaggagcttcaaggcatctttgaggcaatgttaaacaagatcaacaaaggttccaagattaagttagagcaatgaattctttag |
29583093 |
T |
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| Q |
221 |
--------atttacagcatgagttaagtaatgaaggataacagtgttagttccataccgactcttggagacaaagtagtgc |
293 |
Q |
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| T |
29583094 |
acgactacatttacaacatgagttaagtaatgaaggataacagtgttggttctattctgagtcttggagacaaaatagtgc |
29583174 |
T |
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