View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_3 (Length: 685)
Name: NF1379_low_3
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 4e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 427 - 648
Target Start/End: Original strand, 5400292 - 5400514
Alignment:
| Q |
427 |
gtttctaaggacttaaaattgatttagtatgtttggaacttttcaattacaattaattttgtctttatagttgattctaacatgaagctatgatttctaa |
526 |
Q |
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| T |
5400292 |
gtttctaaaggcttaaaattgatttagtatgtttggagcttttcaattacaattaattttgtctttataattgattctaacataaagctatgatttctaa |
5400391 |
T |
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| Q |
527 |
attgtgtctacaaacatcattttttatacttgttcaattcattttcatgtacatgaatcgtacgtaaaccattttatc-ttaaattacttttaactacaa |
625 |
Q |
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| T |
5400392 |
attttgtctacaaacatgtttttttatacttgttcaattcattttcatgaaaatgaatcgtacataaatcattttatctttaacttacttttaaatacaa |
5400491 |
T |
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| Q |
626 |
ttgattttactaaattaattcta |
648 |
Q |
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| T |
5400492 |
ttaattttacaaaattcattcta |
5400514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 5399983 - 5400063
Alignment:
| Q |
108 |
gattctaacttgaagctagaatatgtagcgttgatttctacatataatttttacactatatattaataatttttatcttaaa |
189 |
Q |
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| T |
5399983 |
gattctaactcgaagctagaatatgtagctttgacttctaaatataatttttacactatatattgataa-ttttatcttaaa |
5400063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 5400255 - 5400318
Alignment:
| Q |
359 |
atacatgtttagattcactttttggagagttaaaggtgtttctaaagacttaaaattgatttag |
422 |
Q |
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| T |
5400255 |
atacatgtttagattcactttttggagagtcaaaagtgtttctaaaggcttaaaattgatttag |
5400318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 5400092 - 5400139
Alignment:
| Q |
235 |
gattcacatgcgcattggattttgtagtgacaaaaattcattttaaat |
282 |
Q |
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| T |
5400092 |
gattcacatgcatattgaactttgtagtgacaaaaattcattttaaat |
5400139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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