View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_30 (Length: 432)
Name: NF1379_low_30
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 29 - 422
Target Start/End: Original strand, 47120996 - 47121389
Alignment:
| Q |
29 |
atattcttctcctttttgcgaagttaaatcctgcaatttgttatgtgcaaggcatgaacgaggtcttggcgcctatatactacgtatttagtgccgataa |
128 |
Q |
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| T |
47120996 |
atattcttctcctttttgcgaagttaaatcctgcaatttgttatgtgcaaggcatgaacgaggtcttggcgcctatatactacgtatttagtgccgataa |
47121095 |
T |
|
| Q |
129 |
tgacaatcaaaatgctgtaagcactttcttggtagaaactgtttatcacgtcatatgcacctgtcccttatttgtttcgattggatagggtgaatgcata |
228 |
Q |
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| T |
47121096 |
tgacaatcaaaatgctgtaagcactttcttggtagaaactgtttatcacgtcatatgcacctgtcccttatttgtttcgattggatagggtgaatgcata |
47121195 |
T |
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| Q |
229 |
cnnnnnnncaagatgaatacatgttactcagcaggataccaaaattaaaggtcaaaagaggctctaacttatatttgaaaatttaaatttgagtgcaata |
328 |
Q |
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| T |
47121196 |
ctttttttcaagatgaatacatgttactcagcaggataccaaaattaaaggtcaaaagaggctctaacttgtatttgaaaatttaaatttgagtgcaata |
47121295 |
T |
|
| Q |
329 |
tttcttcccataatgcttcctcgattcacccaatcgtgtacagaagcctgaacgctatactgctaatcaattttgacttttaactttgtctgtg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47121296 |
tttcttcccataatgcttcctcgattcacccaatcgtgtgcagaagcctgaacgatatactgctaatcaattttgacttttaactttgtctgtg |
47121389 |
T |
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