View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_31 (Length: 420)
Name: NF1379_low_31
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 40341547 - 40341169
Alignment:
| Q |
13 |
aatatatatcactttaaatgtaaattaattacatggcacaacgatgtttgtatatgaatatgacttggtgatgcatcaaatattgaatgatttagccaac |
112 |
Q |
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| T |
40341547 |
aatatatatcactttaaatgtaaattaattacatggcacaaggatgtttgtatatgaatatgacctggtgatgcatcaaatattgaatgatttagccaac |
40341448 |
T |
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| Q |
113 |
acaacttttgttgtaaacaaggtctacataacaaagatgcaagactgacaattgtatccttggtattccgatggatggcacaatgcggcataaattccct |
212 |
Q |
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| T |
40341447 |
acaacttttgttgtaaacaaggtctacataacaaaaatgcaagactgacaattgtatccttggtattccgatggatagcacaatgcggcataaattccct |
40341348 |
T |
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| Q |
213 |
ttccttctaagaaagagtgctacaatgtgcttattttttaacctcgtattaatctttctgagttatcaaatgacaacaacaatacaactagaattacttc |
312 |
Q |
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| T |
40341347 |
ttccttctaagaaagagtgctacaatgtgcttattttttaacctcgtattaatctttctgagttatcaaatgacaacaacaatacaactagaattacttc |
40341248 |
T |
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| Q |
313 |
atgaaatgaaaaaacaacaaattgctcgaacaaaacttgcagttatatgtacttgcattgggttttaaaaaggacattt |
391 |
Q |
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| T |
40341247 |
atgaaatgaaaaaacaacaaattgctcgaacaaaacttgcagttatatgtacttgcattgggttttaaaaaggacattt |
40341169 |
T |
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