View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379_low_32 (Length: 403)
Name: NF1379_low_32
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 397
Target Start/End: Complemental strand, 26993246 - 26992871
Alignment:
| Q |
23 |
tttgaatttcaaaatgtatttaacagagaaatattcttgcacgtatcaaagattttcatgtgatggtctcatgacataacaaaacaaaaaatttcatatc |
122 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
26993246 |
tttgcatttcaaaatgtatttaacatagaaatattcttgcaagtatcaaagattttcatgtgatggtctcatgacataacaaaacaaagattttcatatc |
26993147 |
T |
|
| Q |
123 |
ggttt-attttattgacaaattggcatgtttagtactaatgaagcatttataatagcttgtttggaatatctcatgacataaaagctatattagtgttag |
221 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26993146 |
ggttttattttattgacaaattggcttgtttagtactaatgaagcatttataatagcttgtttggtatatctcatgacataaaagctatattagtgttag |
26993047 |
T |
|
| Q |
222 |
gatacacttatnnnnnnnntaacttattatatgtcaataagttattttcgacttatatttttataataaaggtccctaaagtagcttatgagtacaaagc |
321 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26993046 |
gatacacttataaaaaaaataacttattatatgtcaataagttattttcgatttatatttttataataaaggtcccaaaagtagcttatgagtacaaagc |
26992947 |
T |
|
| Q |
322 |
acttaattaaactatttaccaaacacagtgaaagttaacaagagagtactttttatgcatctatcacctatgctac |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26992946 |
acttaattaaactatttaccaaacacagtgaaagttaacaagagagtactttttatgcatctatcacctatactac |
26992871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University