View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_34 (Length: 395)

Name: NF1379_low_34
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_34
NF1379_low_34
[»] chr4 (16 HSPs)
chr4 (30-391)||(36083433-36083770)
chr4 (177-305)||(26189436-26189565)
chr4 (202-276)||(46626811-46626885)
chr4 (206-276)||(5284261-5284331)
chr4 (202-258)||(25155523-25155579)
chr4 (176-256)||(30253118-30253198)
chr4 (181-255)||(12115939-12116013)
chr4 (202-258)||(5689375-5689430)
chr4 (205-256)||(6017186-6017237)
chr4 (212-256)||(15034470-15034514)
chr4 (205-245)||(41955363-41955403)
chr4 (197-256)||(4651144-4651202)
chr4 (205-256)||(31928987-31929038)
chr4 (202-256)||(9438120-9438174)
chr4 (205-243)||(24621969-24622007)
chr4 (206-242)||(9905724-9905760)
[»] chr1 (17 HSPs)
chr1 (177-356)||(12198652-12198829)
chr1 (177-305)||(9923843-9923971)
chr1 (178-293)||(11910133-11910248)
chr1 (177-283)||(41093978-41094084)
chr1 (224-305)||(50970970-50971051)
chr1 (204-279)||(28632657-28632732)
chr1 (205-258)||(126619-126672)
chr1 (208-276)||(31953353-31953421)
chr1 (205-256)||(26686421-26686472)
chr1 (205-256)||(33169277-33169328)
chr1 (206-252)||(16640285-16640331)
chr1 (177-241)||(33069986-33070050)
chr1 (177-245)||(41385335-41385403)
chr1 (316-371)||(11910257-11910312)
chr1 (197-250)||(18225168-18225221)
chr1 (205-245)||(11815472-11815512)
chr1 (206-246)||(18606031-18606071)
[»] chr5 (12 HSPs)
chr5 (177-276)||(12317886-12317985)
chr5 (206-276)||(20355675-20355745)
chr5 (197-256)||(19935107-19935166)
chr5 (205-252)||(7159550-7159597)
chr5 (177-256)||(38386553-38386632)
chr5 (197-257)||(6132904-6132964)
chr5 (202-258)||(15426131-15426187)
chr5 (208-251)||(9738477-9738520)
chr5 (205-256)||(13695131-13695182)
chr5 (177-232)||(37779349-37779404)
chr5 (228-265)||(43185852-43185889)
chr5 (181-257)||(16999115-16999191)
[»] chr2 (15 HSPs)
chr2 (179-305)||(9751876-9752002)
chr2 (179-305)||(38415831-38415957)
chr2 (178-273)||(9011364-9011459)
chr2 (177-256)||(13654735-13654814)
chr2 (205-256)||(34756800-34756851)
chr2 (186-257)||(16114239-16114310)
chr2 (177-256)||(39926319-39926398)
chr2 (202-256)||(8691169-8691223)
chr2 (208-256)||(29759791-29759839)
chr2 (205-256)||(42152523-42152574)
chr2 (179-237)||(15739451-15739509)
chr2 (179-276)||(10018585-10018678)
chr2 (207-255)||(21134944-21134992)
chr2 (205-253)||(28816790-28816838)
chr2 (205-245)||(4570489-4570529)
[»] chr8 (11 HSPs)
chr8 (203-263)||(18983672-18983732)
chr8 (177-256)||(24674563-24674642)
chr8 (177-252)||(17898741-17898816)
chr8 (178-256)||(33091944-33092020)
chr8 (205-256)||(12478216-12478267)
chr8 (185-256)||(26945755-26945826)
chr8 (177-255)||(6377590-6377668)
chr8 (177-276)||(3807373-3807472)
chr8 (205-256)||(21138014-21138065)
chr8 (179-237)||(18702406-18702464)
chr8 (202-251)||(4895740-4895789)
[»] chr7 (9 HSPs)
chr7 (113-305)||(26641049-26641249)
chr7 (177-256)||(9236888-9236967)
chr7 (177-233)||(8670947-8671003)
chr7 (202-256)||(10656089-10656143)
chr7 (177-245)||(7802684-7802752)
chr7 (207-256)||(3355917-3355966)
chr7 (204-252)||(27297572-27297620)
chr7 (181-306)||(1756717-1756841)
chr7 (177-229)||(1830554-1830606)
[»] chr3 (12 HSPs)
chr3 (181-256)||(1319067-1319142)
chr3 (177-256)||(4245762-4245841)
chr3 (177-273)||(497429-497525)
chr3 (222-305)||(28714227-28714308)
chr3 (177-305)||(4824226-4824353)
chr3 (206-256)||(28715173-28715223)
chr3 (177-256)||(4293377-4293456)
chr3 (177-245)||(36869999-36870067)
chr3 (205-256)||(3143003-3143054)
chr3 (205-256)||(38239567-38239618)
chr3 (205-256)||(41199886-41199936)
chr3 (205-251)||(43447670-43447716)
[»] chr6 (12 HSPs)
chr6 (177-256)||(21077304-21077383)
chr6 (202-276)||(20743064-20743138)
chr6 (177-283)||(21075415-21075521)
chr6 (182-276)||(21098561-21098655)
chr6 (177-258)||(11761408-11761488)
chr6 (177-245)||(21076880-21076948)
chr6 (177-256)||(21052193-21052272)
chr6 (177-256)||(21053622-21053701)
chr6 (181-258)||(11966543-11966620)
chr6 (202-276)||(10263572-10263646)
chr6 (202-276)||(31866302-31866376)
chr6 (206-242)||(20683133-20683169)
[»] scaffold0127 (2 HSPs)
scaffold0127 (177-251)||(28494-28568)
scaffold0127 (177-251)||(35400-35474)
[»] scaffold0108 (1 HSPs)
scaffold0108 (208-256)||(20957-21005)
[»] scaffold0655 (1 HSPs)
scaffold0655 (210-256)||(1516-1562)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 36083433 - 36083770
Alignment:
Q  30 ctttggtggttcaaatgctacgctacactaactggccggattgcttccaatcatactatccatgaaataacaatttttaaaattagaaactctcgatttt 129  Q
    |||||| ||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  36083433 ctttggcggttcaaatgctacgctacactaactgg---gattgcttccaatcatagtatccatgaaataacaatttttaaagttagaaactctcgatttt 36083529  T
Q  130 tctccggaatttcctgcgggttgtcttgaattttccgcaggaaagagggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgttt 229  Q
     ||||||||||||||||                     |||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  36083530 cctccggaatttcctgc---------------------aggaaacaaggattttgccaaggattaaggttcccaggtaataccttcgtgggtaattgttt 36083608  T
Q  230 cctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaatgaaattggacaataatccgcaggaaatattagatcggtgtttgaggagtt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||    
T  36083609 cctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaaggaaattggacaataatccgcaggaaatattcggtcagtgtttgaggagtt 36083708  T
Q  330 ttccttgcccgaacatactcgcaggaatttccgcaggaaacgtgtatagagaataatctacc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  36083709 ttccttgcccgaacatactcgcaggaatttccgcaggaaacgtgtatagagaacaatatacc 36083770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 26189436 - 26189565
Alignment:
Q  177 ggattttgccaaggattaatgttctca-ggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcc 275  Q
    ||||||||||||||||||  || | || |||||||||||| ||||||||||||| ||||| ||||||| |||||||||||| ||||||| ||||||||||    
T  26189436 ggattttgccaaggattagagtccccaaggtaataccttcatgggtaattgttttctgagaattttagaaaccgcaggaaaatcacctggggaaatttcc 26189535  T
Q  276 taatgaaattggacaataatccgcaggaaa 305  Q
    |||  ||||||||||  |||||| ||||||    
T  26189536 taagaaaattggacataaatccgaaggaaa 26189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 46626811 - 46626885
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||| || ||||||||||||||    
T  46626811 caggtaatacattcgtgggtaattgcttcatgaggattttatgaaccgcaggaaacttacttgcggaaatttcct 46626885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 5284261 - 5284331
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||  |||||||||||||    
T  5284261 taatacctttgtgggtaattgtttcctgaggattttaggaaccgcagaaaaattacaggcggaaatttcct 5284331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 25155579 - 25155523
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaact 258  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  25155579 caggtaataccttcgtggttaattgtttcctgaggatttaagaaaccgcaggaaact 25155523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 30253118 - 30253198
Alignment:
Q  176 gggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||| || |||||| | |||| || |||  |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  30253118 gggattttacctaggatttaagttcccaagtatgaccttcgtgggtaattgtttcctgagaattttagtaaccgcaggaaa 30253198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 12116013 - 12115939
Alignment:
Q  181 tttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaa 255  Q
    ||||||||||| |   |||| ||||||| ||||||||||||||||||||||| || ||||||||| |||||||||    
T  12116013 tttgccaaggaatttggttcccaggtaacaccttcgtgggtaattgtttccttagaattttaggatccgcaggaa 12115939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 5689375 - 5689430
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaact 258  Q
    |||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||    
T  5689375 caggtaatacct-cgtgggtaattgtttcctgaggatttttgaaacagcaggaaact 5689430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 6017186 - 6017237
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||||||||||||||||||| | |||||||||| ||| ||||||    
T  6017186 gtaataccttcgtgggtaattgtttccttatgattttaggatccgtaggaaa 6017237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 15034514 - 15034470
Alignment:
Q  212 cttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||    
T  15034514 cttcgtgggtaattgtttccttaagattttaggatccgcaggaaa 15034470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 41955363 - 41955403
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  41955363 gtaataccttcgtgggtaattgttttcttaggattttagga 41955403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 4651144 - 4651202
Alignment:
Q  197 gttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||| |||||||||||||||||| |||||||||||| | ||||||| || ||||||||||    
T  4651144 gttcccaggtaataccttcgtgg-taattgtttccttaagattttaagatccgcaggaaa 4651202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 31929038 - 31928987
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||| ||||||||||||| | |||||||||||| | ||||||||    
T  31929038 gtaataccttcgcgggtaattgtttcgttaggattttaggatctgcaggaaa 31928987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 9438120 - 9438174
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||| |||| |||||||||||||||  |||||| ||||| ||||||||||    
T  9438120 caggtaatatcttcttgggtaattgtttccctaggattctaggatccgcaggaaa 9438174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 24621969 - 24622007
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttag 243  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  24621969 gtaatactttcgtgggtaattgtttccttaggattttag 24622007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 9905724 - 9905760
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggatttta 242  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  9905724 taatacctttgtgggtaattgtttccttaggatttta 9905760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 12198652 - 12198829
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||| ||||    
T  12198652 ggattttgccaagaattaaggttcccaggtaatacctttgtgggtaattgtttc-tgaggattttagtaaccgtaggaaagtcacctgcggaaatatcct 12198750  T
Q  277 aatgaaattggacaataatccgcaggaaatattagatcggtgtttgaggagttttccttgcccgaacatactcgcaggaa 356  Q
    || ||||| |||||||||||||||||||||||| | || ||||| ||||| |||||||||||| |||||| |||||||||    
T  12198751 aaggaaatcggacaataatccgcaggaaatattcggtcagtgttagagga-ttttccttgcccaaacatagtcgcaggaa 12198829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 9923843 - 9923971
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |||    
T  9923843 ggattttgccaaggattaaggttcccaggtaataccttcgtgggtaattgtttcctgaggattttagtaaccgcaggaaatttacctgcggaaattgcct 9923942  T
Q  277 aatgaaattggacaataatccgcaggaaa 305  Q
    ||  |||||| |||| |||||||||||||    
T  9923943 aaaaaaattgaacaaaaatccgcaggaaa 9923971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 11910133 - 11910248
Alignment:
Q  178 gattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttccta 277  Q
    ||||||||||| |||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  11910133 gattttgccaacgattaaggttaccaggtaataccttcgtggctaattgtttcctgaggattttaggaaccccaggaaactaacctgcggaaatttccta 11910232  T
Q  278 atgaaattggacaata 293  Q
    | ||||||||||||||    
T  11910233 aggaaattggacaata 11910248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 41093978 - 41094084
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||||||||||||||||||   || || ||||||||||||||||||||||||||||  ||||||||| |||| |||||| ||  | || |||||||||||    
T  41093978 ggattttgccaaggattaacactcccatgtaataccttcgtgggtaattgtttcctatggattttagaaaccacaggaatctttcatgtggaaatttcct 41094077  T
Q  277 aatgaaa 283  Q
    || ||||    
T  41094078 aaggaaa 41094084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 50970970 - 50971051
Alignment:
Q  224 ttgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaatgaaattggacaataatccgcaggaaa 305  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||||   ||||||| |||| | |||||||||||    
T  50970970 ttgtttcctgaggatttttggaaccacaggaaaatcacctgcggaaatttcctctagaaattgaacaaaattccgcaggaaa 50971051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 28632732 - 28632657
Alignment:
Q  204 ggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaat 279  Q
    |||||||||||  || |||||||||||||||| ||| |||||||||||||||| ||| ||||||||||| ||||||    
T  28632732 ggtaatacctttatgagtaattgtttcctgagaattataggaaccgcaggaaattcatctgcggaaattccctaat 28632657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 126619 - 126672
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaact 258  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  126619 gtaataccttcgtgggtaaatgtttcctgatgattttagaaaccgcaggaaact 126672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 31953421 - 31953353
Alignment:
Q  208 ataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||||  ||| | ||||||||||    
T  31953421 atactttcgtgggtaattatttcctgaggattttagaaaccgcaggaaactttcctaccgaaatttcct 31953353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 26686472 - 26686421
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  26686472 gtaatatcttcgtgggtaattgtttccttaggattttaggatccgcaggaaa 26686421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 33169328 - 33169277
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  33169328 gtaataccttcgtgggtaattgtttccttaggatattaggatccgcaggaaa 33169277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 16640331 - 16640285
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggattttaggaaccgcag 252  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  16640331 taataccttcgtgggtaattgtttccttaggattttaggatccgcag 16640285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 33070050 - 33069986
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggatttt 241  Q
    ||||||||||||||||  | |||||||||||| |||||| ||||| |||||||||| ||||||||    
T  33070050 ggattttgccaaggatctaggttctcaggtaaaaccttcatgggttattgtttccttaggatttt 33069986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 41385335 - 41385403
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    ||||||| | ||||||| | |||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  41385335 ggattttcctaaggattcaggttcccaggtaataccttcgtgtgtaatggattcctgaggattttagga 41385403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 11910257 - 11910312
Alignment:
Q  316 gtgtttgaggagttttccttgcccgaacatactcgcaggaatttccgcaggaaacg 371  Q
    ||| ||||| |||||||||||||| |||||||||||||||||||||  ||||||||    
T  11910257 gtgcttgagaagttttccttgcccaaacatactcgcaggaatttccagaggaaacg 11910312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 18225221 - 18225168
Alignment:
Q  197 gttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgc 250  Q
    |||| ||||||||||||||||||||||||||||| | | |||||||||| ||||    
T  18225221 gttcccaggtaataccttcgtgggtaattgtttcgttatgattttaggatccgc 18225168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 11815512 - 11815472
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    |||||||| ||||||||||||||||||| | ||||||||||    
T  11815512 gtaataccatcgtgggtaattgtttccttaagattttagga 11815472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 18606071 - 18606031
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggattttaggaa 246  Q
    ||||||||| |||||||| | ||||||||||||||||||||    
T  18606071 taatacctttgtgggtaactatttcctgaggattttaggaa 18606031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 12317985 - 12317886
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||| ||||||| | |||| ||||||  ||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||    
T  12317985 ggattttgctaaggatttaggttcccaggtataaccttcgtgggtaattgtttcctgaggattttatgatctgcaggaaactaacctgcggaaatttcct 12317886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 20355675 - 20355745
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||  |||||||||||||    
T  20355675 taatacctttgtgggtaattgtttcctgaggattttaggaaccgcagaaaaattacaggcggaaatttcct 20355745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 19935166 - 19935107
Alignment:
Q  197 gttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  19935166 gttcccaggtaataccttcatgggtaattgtttccttaggattttaggatccgcaggaaa 19935107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 7159597 - 7159550
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcag 252  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  7159597 gtaataccttcgtgggtaattgtttccttaggattttaggatccgcag 7159550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 38386553 - 38386632
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||| | |||| |||||||||||||||  |||||||||||||| || |||||| |  ||||||||||    
T  38386553 ggattttgccaaggattgaggttcccaggtaataccttcgaaggtaattgtttccttagaattttaagttccgcaggaaa 38386632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 6132904 - 6132964
Alignment:
Q  197 gttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaac 257  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||   ||||||||||||    
T  6132904 gttcccaggtataaccttcgtgggtaattgtttcctgaggattttattcaccgcaggaaac 6132964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 15426187 - 15426131
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaact 258  Q
    |||||||||||||||||||||||| ||||||||||||||  | ||||||| ||||||    
T  15426187 caggtaataccttcgtgggtaattatttcctgaggatttctgaaaccgcaagaaact 15426131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 9738477 - 9738520
Alignment:
Q  208 ataccttcgtgggtaattgtttcctgaggattttaggaaccgca 251  Q
    |||||||||| |||||||||||||| |||||||||||| |||||    
T  9738477 ataccttcgtaggtaattgtttccttaggattttaggatccgca 9738520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 13695131 - 13695182
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||| |||||||||||||||| | |||||||||| ||||| ||||    
T  13695131 gtaataccttcatgggtaattgtttccttacgattttaggatccgcaagaaa 13695182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 37779404 - 37779349
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcct 232  Q
    ||||||||| |||||||   |||| ||||||||||||||||||||| |||||||||    
T  37779404 ggattttgctaaggattttggttcccaggtaataccttcgtgggtagttgtttcct 37779349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 43185889 - 43185852
Alignment:
Q  228 ttcctgaggattttaggaaccgcaggaaactcacctgc 265  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  43185889 ttcctgaggattttagaaaccgcaggaaacttacctgc 43185852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 16999115 - 16999191
Alignment:
Q  181 tttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaac 257  Q
    ||||||| ||||| | ||||  || |||||||||||||| ||||  ||||| ||||||| ||| |||||||||||||    
T  16999115 tttgccagggattcaggttcctagctaataccttcgtggataatgttttcccgaggattatagaaaccgcaggaaac 16999191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 179 - 305
Target Start/End: Complemental strand, 9752002 - 9751876
Alignment:
Q  179 attttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaa 278  Q
    ||||||||||||||||| ||   |||||||||||||||| |||||||||||| ||||||||| | |||| |||||||||| ||||||||||||| | |||    
T  9752002 attttgccaaggattaaggtatccaggtaataccttcgttggtaattgtttcatgaggatttgaagaactgcaggaaacttacctgcggaaattgcgtaa 9751903  T
Q  279 tgaaattggacaataatccgcaggaaa 305  Q
     ||||   ||||| |||||||||||||    
T  9751902 ggaaacgtgacaaaaatccgcaggaaa 9751876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 179 - 305
Target Start/End: Complemental strand, 38415957 - 38415831
Alignment:
Q  179 attttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaa 278  Q
    |||||||||||||| || ||||  |||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||| || |||||||||| ||| |    
T  38415957 attttgccaaggatcaaggttcctaggtaataccatcgtgggtaattgtttcctgaggaacttaggaaccacaggaaacttacatgcggaaattgcctta 38415858  T
Q  279 tgaaattggacaataatccgcaggaaa 305  Q
     || | ||||||| | |||||||||||    
T  38415857 ggatactggacaaaattccgcaggaaa 38415831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 9011459 - 9011364
Alignment:
Q  178 gattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaattt 273  Q
    ||||||||||||| || | |||| ||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||   |||||||||||||    
T  9011459 gattttgccaaggctttaggttcccagataataccttcgtgggtaattatttcctgaggattttagaaactgcaggaaacattcctgcggaaattt 9011364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 13654814 - 13654735
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||  ||| ||||||||||||| | ||||||||    
T  13654814 ggattttgccaaggatttaggttcccaggtaataccttcgtgggtaattgaatccagaggattttaggatctgcaggaaa 13654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 34756800 - 34756851
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34756800 gtaataccttcgtgggtaattgtttccttaggattttaggatccgcaggaaa 34756851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 16114310 - 16114239
Alignment:
Q  186 caaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaac 257  Q
    |||||||| | |||| ||| ||||||||| |||||||| |||||||| |||||||||||||||||| |||||    
T  16114310 caaggattcaggttcccagctaatacctttgtgggtaactgtttcctaaggattttaggaaccgcaagaaac 16114239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 39926398 - 39926319
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||| ||||   |||||||||||||||||| ||||||||| ||||| | || ||||||||| ||||||||||    
T  39926398 ggattttgccaaagattttggttctcaggtaatacctttgtgggtaatcgtttcattagaattttaggatccgcaggaaa 39926319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 8691169 - 8691223
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  8691169 cagggaatatcttcgtgggtaattgtttcgtgaggattttagaaaccgcaggaaa 8691223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 29759839 - 29759791
Alignment:
Q  208 ataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  29759839 ataccttggtgggtaattgtttcctgaggatttttgaaaccgcaggaaa 29759791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 42152574 - 42152523
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||| ||||||    
T  42152574 gtaatatcttcgtgggtaattgtttccttaggattttaggatccgtaggaaa 42152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 15739509 - 15739451
Alignment:
Q  179 attttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgagga 237  Q
    ||||||||||||||||| |||||||||| ||| ||||  ||||||||||||| ||||||    
T  15739509 attttgccaaggattaaggttctcaggtgatatcttcacgggtaattgtttcttgagga 15739451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 10018678 - 10018585
Alignment:
Q  179 attttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||||| |||||||||| ||||||| ||    |||| |||| ||||||||||| ||| ||||||||||||||| |||| |  ||||||||| ||||||    
T  10018678 attttgacaaggattaaggttctcatgt----cctttgtggataattgtttccggagtattttaggaaccgcatgaaattttcctgcggaagtttcct 10018585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 21134992 - 21134944
Alignment:
Q  207 aataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaa 255  Q
    |||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  21134992 aatacctttgtgggtaatagtttccttaggattttaggatccgcaggaa 21134944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 28816790 - 28816838
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcagg 253  Q
    |||||| |||||||| |||||||||||| |||||||||||| |||||||    
T  28816790 gtaatagcttcgtggataattgtttccttaggattttaggatccgcagg 28816838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 4570529 - 4570489
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    ||||||||||||| |||||||||||||| | ||||||||||    
T  4570529 gtaataccttcgtaggtaattgtttccttaagattttagga 4570489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 18983732 - 18983672
Alignment:
Q  203 aggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacct 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983732 aggtattaccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacct 18983672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 24674642 - 24674563
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||| |||||| ||||||||| |  ||||||||||    
T  24674642 ggattttgccaaggattgaggttcccaggtaataccttcgtgggtaattatttccttaggattttaagttccgcaggaaa 24674563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 17898741 - 17898816
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcag 252  Q
    |||||||||||||||||     || |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  17898741 ggattttgccaaggattttcactcccaggtaataccttcgtgggtaattatttcctgtggattttaggaaccgcag 17898816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 33091944 - 33092020
Alignment:
Q  178 gattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||| |||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||    
T  33091944 gattttgtcaaggatttaggtt-tcaggtaataccttcgtgggtaattgtttccttaggatttta-gatccgcaggaaa 33092020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 12478216 - 12478267
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  12478216 gtaatatcttcgtgggtaattgtttccttaggattttaggatccgcaggaaa 12478267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 26945755 - 26945826
Alignment:
Q  185 ccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||| | |||| ||||||  |||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  26945755 ccaaggatttaggttcccaggtataaccttcgttggtaattgtctcctgaggattttagtaaccgcaggaaa 26945826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 6377590 - 6377668
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaa 255  Q
    |||||||| |||| ||| | |||| || |||| | ||||||||||||||||||||||| |||||||||| |||||||||    
T  6377590 ggattttgtcaagaatttaggttcccatgtaacagcttcgtgggtaattgtttcctgaagattttaggatccgcaggaa 6377668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 3807373 - 3807472
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||| |||| |||| | ||||||| |||  ||||| |||||||||||| ||||||||||| ||| ||||||| |||||    |||||||||||||||    
T  3807373 ggattttaccaatgatttaggttctcatgtataacctttgtgggtaattgtgtcctgaggattgtagtaaccgcaagaaacgtttctgcggaaatttcct 3807472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 21138065 - 21138014
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||||||||||||||||||| | ||||||||||  |||||||||    
T  21138065 gtaataccttcgtgggtaattgtttccttatgattttaggattcgcaggaaa 21138014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 18702464 - 18702406
Alignment:
Q  179 attttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgagga 237  Q
    ||||||||||||||||| |||||||||| ||| ||||  ||||||||||||| ||||||    
T  18702464 attttgccaaggattaaggttctcaggtgatatcttcacgggtaattgtttcttgagga 18702406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 4895740 - 4895789
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgca 251  Q
    ||||| |||||||||||| |||||||||||| |||||||||||| |||||    
T  4895740 caggtgataccttcgtggttaattgtttccttaggattttaggatccgca 4895789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 26641249 - 26641049
Alignment:
Q  113 tagaaactctcgatttttctccggaatttcctgcgggttgtcttgaattttccgcaggaaa--------gag-ggattttgccaaggattaatgttctca 203  Q
    ||||||||| ||||||| |||||||||||||| ||| || |  |||| |||||||||||||         || |||||||  ||||||||||| ||| ||    
T  26641249 tagaaactcccgattttcctccggaatttcctacggattatactgaaatttccgcaggaaacctgtttccagcggattttatcaaggattaattttccca 26641150  T
Q  204 ggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaatgaaattggacaataatccgcagga 303  Q
    ||||||||||| || || |||||||||||||||||||||| ||||||||||||   |||||||||||||||||||  ||| |||||||   |||||||||    
T  26641149 ggtaataccttagt-ggaaattgtttcctgaggattttagaaaccgcaggaaatgtacctgcggaaatttcctaagaaaactggacaaacttccgcagga 26641051  T
Q  304 aa 305  Q
    ||    
T  26641050 aa 26641049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 9236888 - 9236967
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||    
T  9236888 ggattttcccaaggattcaggttcccaggtaataccttcgtgggtaattgattcccgaggaatttaggatccgcaggaaa 9236967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 8670947 - 8671003
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctg 233  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  8670947 ggattttgccaaggattaaggttcccaggtaataccttcgtaggtaattgtttcctg 8671003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 10656143 - 10656089
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||||||||| |||||| |||||||||||||||||| || |||||||    
T  10656143 caggtaataccttcgtggataattgattcctgaggattttaggatccacaggaaa 10656089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 7802684 - 7802752
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    |||||||||| |||||| | |||| ||| |||| |||| ||||||||||||||||| ||||||||||||    
T  7802684 ggattttgcctaggattgaggttcccagttaatccctttgtgggtaattgtttccttaggattttagga 7802752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 3355917 - 3355966
Alignment:
Q  207 aataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||| || |||||||||||||| |||||||||||| ||||||||||    
T  3355917 aatacctttgtaggtaattgtttccttaggattttaggatccgcaggaaa 3355966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 27297620 - 27297572
Alignment:
Q  204 ggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcag 252  Q
    |||||||||||| |||||||||| ||||| |||||||||||| ||||||    
T  27297620 ggtaataccttcatgggtaattgattcctaaggattttaggatccgcag 27297572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 306
Target Start/End: Complemental strand, 1756841 - 1756717
Alignment:
Q  181 tttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaatg 280  Q
    ||||||| ||||| | |||| || |||  ||||| |||||||||||||| ||||||||||||| |||| ||  |||||  ||||| |||||||||| | |    
T  1756841 tttgccatggatttaggttcccatgtataacctttgtgggtaattgttttctgaggattttagtaaccacataaaactttcctgc-gaaatttcctcagg 1756743  T
Q  281 aaattggacaataatccgcaggaaat 306  Q
    ||||  || ||| ||||||| |||||    
T  1756742 aaatgtgaaaattatccgcaagaaat 1756717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 1830606 - 1830554
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgttt 229  Q
    |||||||||||||| || | |||| ||| ||||||||| ||||||||||||||    
T  1830606 ggattttgccaaggttttaggttcacagataatacctttgtgggtaattgttt 1830554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 1319142 - 1319067
Alignment:
Q  181 tttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||| |||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1319142 tttgtcaaggattcaggttcccagctaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 1319067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 4245841 - 4245762
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||| ||||||||| | |||  ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||    
T  4245841 ggattttaccaaggatttaagtttccaggtataaccttcgtgggtaattgtttcctgaggattttagtaaccgcaggaaa 4245762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 497429 - 497525
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaattt 273  Q
    ||||||||| ||||||| | |||| ||| ||  ||||||||||||||||||||||||||||||||| || |||||| ||||| | ||| ||||||||    
T  497429 ggattttgctaaggatttaggttcccagatataaccttcgtgggtaattgtttcctgaggattttacgatccgcagaaaacttatctgtggaaattt 497525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 28714308 - 28714227
Alignment:
Q  222 aattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcctaatgaaattggacaataatccgcaggaaa 305  Q
    ||||||||| ||||||||||||||||| |||||||   ||||||||||||||||| | |||||||||||| |||||||||||||    
T  28714308 aattgtttc-tgaggattttaggaacc-caggaaatcaacctgcggaaatttccttaggaaattggacaaaaatccgcaggaaa 28714227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 4824353 - 4824226
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||||||||||||| ||| | || ||||||  ||||||||||||||||| |||| |||||| ||  ||||||||||| | |||| |||||||| |    
T  4824353 ggattttgccaaggattaaggtttttagttaatacaatcgtgggtaattgtttcatgagtattttatgattcgcaggaaactta-ctgccgaaatttcgt 4824255  T
Q  277 aatgaaattggacaataatccgcaggaaa 305  Q
     | |||||  ||||| |||||||| ||||    
T  4824254 taggaaatgtgacaaaaatccgcatgaaa 4824226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 28715173 - 28715223
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  28715173 taataccttcgcgggtaattgtttccttaggattttagaaaccgcaggaaa 28715223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 4293377 - 4293456
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||| ||||| | | |||| ||||||  ||||| ||||||||||||||||| |||||||||| ||| ||||||||    
T  4293377 ggattttgctaaggacttaggttcccaggtataacctttgtgggtaattgtttccttaggattttagaaactgcaggaaa 4293456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 36869999 - 36870067
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    |||||||| |||||||| | |||| || ||||||||||||||||||||| ||| ||||| ||| |||||    
T  36869999 ggattttgtcaaggatttaggttcccaagtaataccttcgtgggtaattatttgctgagaattctagga 36870067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 3143054 - 3143003
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||| |||||||||||||| || |||||||||||| ||||| ||||    
T  3143054 gtaatacctttgtgggtaattgttttcttaggattttaggatccgcaagaaa 3143003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 38239567 - 38239618
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||||||||||| || ||||||| |||| ||| ||||||    
T  38239567 gtaataccttcgtgggtaattgttttcttaggatttaaggatccgtaggaaa 38239618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 41199936 - 41199886
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    |||||||||||| ||||||||||||||| || ||||||||| ||||||||||    
T  41199936 gtaataccttcg-gggtaattgtttccttagaattttaggatccgcaggaaa 41199886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 43447670 - 43447716
Alignment:
Q  205 gtaataccttcgtgggtaattgtttcctgaggattttaggaaccgca 251  Q
    |||||||||| ||| ||||||||||||| |||||||||||| |||||    
T  43447670 gtaatacctttgtgagtaattgtttccttaggattttaggatccgca 43447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 21077383 - 21077304
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||| ||||||||| | |||| |||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||    
T  21077383 ggattttcccaaggattcaggttcccaggtaatgccttcgtggttaattgattcctgaggattttaggatccgcaggaaa 21077304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 20743064 - 20743138
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||||||||||||||||| || |||||||||||||||||||| |||||||||||| |  ||||||||| ||||||    
T  20743064 caggtaataccttcgtggatagttgtttcctgaggattttagaaaccgcaggaaaatttcctgcggaactttcct 20743138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 21075415 - 21075521
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||| |||||||||||| | |||| | ||||  || |||||||||||||||||||| |||||||||| ||||||||||||||  | ||||||| ||||||    
T  21075415 ggatcttgccaaggatttaggttccctggtataacattcgtgggtaattgtttccttaggattttagaaaccgcaggaaactttcatgcggaattttcct 21075514  T
Q  277 aatgaaa 283  Q
     ||||||    
T  21075515 catgaaa 21075521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 21098561 - 21098655
Alignment:
Q  182 ttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    |||||||||||| | |||| | ||||  ||||||||||||||||||||||  |||||||||| ||||||||||||||  ||||||||| ||||||    
T  21098561 ttgccaaggatttaggttccctggtataaccttcgtgggtaattgtttccataggattttagaaaccgcaggaaactttcctgcggaattttcct 21098655  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 11761488 - 11761408
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaact 258  Q
    |||||||||||||| || | ||||  |||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  11761488 ggattttgccaaggttttaggttcctaggtaataccttcgtgggtaattgtttccttagga-tttgggatccgcaggaaact 11761408  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 21076880 - 21076948
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttagga 245  Q
    ||||||| |||| |||| | |||| || |||||||||||||||||||||| ||||||||||||||||||    
T  21076880 ggattttcccaatgattcaggttcccaagtaataccttcgtgggtaattgattcctgaggattttagga 21076948  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 21052193 - 21052272
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||| | ||||   ||||  ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  21052193 ggattttgccaaggatttaggttccttggtataaccttcgtgggtagttgtttccttaggattttagtaaccgcaggaaa 21052272  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 21053622 - 21053701
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||| |||| |||| | |||| || |||||||||||||||||||||| ||||||| |||||||||| ||||| ||||    
T  21053622 ggattttcccaatgattcaggttcccaagtaataccttcgtgggtaattgattcctgacgattttaggatccgcatgaaa 21053701  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 11966620 - 11966543
Alignment:
Q  181 tttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaact 258  Q
    ||||| ||||||| | |||| ||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||||||    
T  11966620 tttgctaaggatttaggttcccagctaataccttcgtgggtaactgtttcgtgagaattttcgaaaccgcaggaaact 11966543  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 10263572 - 10263646
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||| ||||||||||||||||||| ||| ||||||| || ||| |||||||  |  ||| ||||||||||||    
T  10263572 caggtaaaaccttcgtgggtaattgttccctaaggatttcagaaacggcaggaatttttcctacggaaatttcct 10263646  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 31866302 - 31866376
Alignment:
Q  202 caggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcggaaatttcct 276  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||| |||||  |||||||  ||| ||||||| ||||    
T  31866302 caggtaatagcttcgcgggtaattgtttcgtgagaattttagaaaccgatggaaactttcctacggaaatgtcct 31866376  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 20683169 - 20683133
Alignment:
Q  206 taataccttcgtgggtaattgtttcctgaggatttta 242  Q
    ||||||||||||||||||||||||||||  |||||||    
T  20683169 taataccttcgtgggtaattgtttcctggagatttta 20683133  T

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Target: scaffold0127 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 28568 - 28494
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgca 251  Q
    ||||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  28568 ggattttcccaaggattcaggttcccaggtaataccttcgtgtgtaattgattcctgaggattttaggatccgca 28494  T

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Target: scaffold0127; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 35474 - 35400
Alignment:
Q  177 ggattttgccaaggattaatgttctcaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgca 251  Q
    ||||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  35474 ggattttcccaaggattcaggttcccaggtaataccttcgtgtgtaattgattcctgaggattttaggatccgca 35400  T

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Target: scaffold0108 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 21005 - 20957
Alignment:
Q  208 ataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  21005 ataccttcgcgggtaattgtttccttaggattttaggatccgcaggaaa 20957  T

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Target: scaffold0655 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 1516 - 1562
Alignment:
Q  210 accttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaa 256  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||    
T  1516 accttcgtgggtaattgtttccttaagattttaggatccgcaggaaa 1562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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