View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_35 (Length: 394)
Name: NF1379_low_35
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 45035153 - 45035507
Alignment:
| Q |
1 |
cctccatcctccttaggtttgcaaatagtatccacaaacatattaaatgacatttccttacattagaagtagagtgcaaattaaagtttctacaaagccc |
100 |
Q |
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| T |
45035153 |
cctccatcctccttaggtttgcaaatagtatccacaaacgtattgaatgacatttccttacattagaagtagagtgcaaattaaagtttctacaaagccc |
45035252 |
T |
|
| Q |
101 |
ctccacatcatcacaaatagatttaggattatctcaagattacatcgcataattcggaaaactcataatacaactttgagctagagtgatttggtcggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45035253 |
ctccacatcatcacaaatagatttaggattatttgaagattacatcgcataattcggaaaactcataatacaactttgagctagagtgatttggtcggcc |
45035352 |
T |
|
| Q |
201 |
atagaaagtgagttaactttccaccc-aaaattttactcttgattgatatagagaatctgataataccagggatcgaatcttggactacacatttgtatc |
299 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45035353 |
ata-----tgagttaactttccacccaaaaattttactcttgattgatatagagaatccgataataccagggatcgaatcttggactacacatttgtatc |
45035447 |
T |
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| Q |
300 |
cgcacagaacacaattgttaatacttaggagtaaattcaatcactcaaattttctggagt |
359 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45035448 |
cgcacataacacaattgttaatacttaggagtaaattcaatcactcaaattttctggagt |
45035507 |
T |
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