View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_40 (Length: 385)
Name: NF1379_low_40
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 36 - 376
Target Start/End: Complemental strand, 40632858 - 40632530
Alignment:
| Q |
36 |
actacctgtgatgccatcagaacctttgccattgtgagtcatatgtctcttctgcttcttagtcttcctaccagacttggtgttagatgctatgttagta |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40632858 |
actacctgtgatgccatcagaacctttgccattgtgagtcatatgtctcttctgcttcttagtcttcctaccagacttggtgttag------------ta |
40632771 |
T |
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| Q |
136 |
tgcctggctaagtatatgtcagctgcatgctccatatcagtgttaatgtctgaggcaaagtcatcatcctcaacatcaccccaaaatttcttcaatatct |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632770 |
tgcctggctaagtatatgtcagctgcatgctccatatcagtgttaatgtctgaggcaaagtcatcatcctcaacatcaccccaaaatttcttcaatatct |
40632671 |
T |
|
| Q |
236 |
tcacacttttaaggttgcctgctgagtggttactagagtcacaagactttccacctatgactctcttatccagacttaattcttcatccacactagtaat |
335 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632670 |
tcacacttttaaggctgcctgctgagtggttactagtgtcacaagactttccacctatgactctcttatccagacttaattcttcatccacactagtaat |
40632571 |
T |
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| Q |
336 |
aggcacaactaagggtctgtcctgtatcatactagaattat |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632570 |
aggcacaactaagggtctgtcctgtatcatactagaattat |
40632530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 47 - 327
Target Start/End: Original strand, 41411572 - 41411851
Alignment:
| Q |
47 |
tgccatcagaacctttgccattgtgagtcatatgtctcttctgcttcttagtcttcctaccagacttggtgttagatgctatgttagtatgcctggctaa |
146 |
Q |
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|||||||||||||||||| || |||| || || | || |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |
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| T |
41411572 |
tgccatcagaacctttgcaat-gtgaatcttagggcttttctgcttcttagtcttcctaccagacttggtgttagatgctatgtcagtatgtttggccaa |
41411670 |
T |
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| Q |
147 |
gtatatgtcagctgcatgctccatatcagtgttaatgtctgaggcaaagtcatcatcctcaacatcaccccaaaatttcttcaatatcttcacactttta |
246 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
41411671 |
gtatctgtcagctgcatgcaccatatcagtgttaatgtctgaggcagagtcgtcatcctcaacatcaccccaaaattccttcattatctgcacactttta |
41411770 |
T |
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| Q |
247 |
aggttgcctgctgagtggttactagagtcacaagactttccacctatgactctcttatccagacttaattcttcatccaca |
327 |
Q |
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||| || | ||||||||||||||| ||||| ||||||||||||||| ||||| || ||||||| || |||||||||||| |
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| T |
41411771 |
aggctggcagctgagtggttactaatgtcaccagactttccacctataactcttttgcccagactcaagtcttcatccaca |
41411851 |
T |
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