View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_42 (Length: 384)
Name: NF1379_low_42
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 168 - 373
Target Start/End: Complemental strand, 2733753 - 2733548
Alignment:
| Q |
168 |
aatcgcatttctcgtttcgaatttactgtttcgtgattttgattaattctttcttgtttcaggtgatgacagtactactggaattaaaaagaaggttgag |
267 |
Q |
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| T |
2733753 |
aatcgcatttctcgtttcgaatttactgtttcgtgtttttgattaattctttcttgtttcaggtgatgacagtactactggaattaaaaagaaggttgag |
2733654 |
T |
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| Q |
268 |
gatgtagttccaattgctactggtcatgagcgtgaggagattcaggctcaacttgaggtctcttcattctatctatcttagcgataattcttttcattcc |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2733653 |
gatgtagttccaattgctactggtcatgagcgtgaggagattcaggctcaacttgaggtctcttcattctatctatcttagctataattcttttcattcc |
2733554 |
T |
|
| Q |
368 |
attcat |
373 |
Q |
| |
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|||||| |
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| T |
2733553 |
attcat |
2733548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 2733900 - 2733772
Alignment:
| Q |
15 |
atcaatcatgttacgaagattactcatctcttcacaactcaaaaccctaacttctcgccgatctccttcctccgccgtcgctgtttccttactctcccgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2733900 |
atcaatcatgttacgaagattactcatctcttcacaactcaaaaccctaacttctcgccgatctccttcctccgccgttgctgtttccttactctcccgc |
2733801 |
T |
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| Q |
115 |
caccacttctctactcaatccagttatta |
143 |
Q |
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| T |
2733800 |
caccacttctctactcaatccagttatta |
2733772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 44414483 - 44414553
Alignment:
| Q |
256 |
aagaaggttgaggatgtagttccaattgctactggtcatgagcgtgaggagattcaggctcaacttgaggt |
326 |
Q |
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| T |
44414483 |
aagacggttgaggatgtagttccaattgctaccggtcatgaacgtgaggagattcaagctgatcttgaggt |
44414553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 19932765 - 19932814
Alignment:
| Q |
262 |
gttgaggatgtagttccaattgctactggtcatgagcgtgaggagattca |
311 |
Q |
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| T |
19932765 |
gttgaggatgtagttacaattgctactggtcatgaacgtgagaagattca |
19932814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 19922945 - 19922990
Alignment:
| Q |
266 |
aggatgtagttccaattgctactggtcatgagcgtgaggagattca |
311 |
Q |
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||||||||||| |||||||||| |||||||| |||||| ||||||| |
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| T |
19922945 |
aggatgtagttacaattgctaccggtcatgaacgtgagaagattca |
19922990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 19925695 - 19925740
Alignment:
| Q |
266 |
aggatgtagttccaattgctactggtcatgagcgtgaggagattca |
311 |
Q |
| |
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||||||||||| |||||||||| |||||||| |||||| ||||||| |
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|
| T |
19925695 |
aggatgtagttacaattgctaccggtcatgaacgtgagaagattca |
19925740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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