View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_43 (Length: 382)
Name: NF1379_low_43
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 52 - 350
Target Start/End: Original strand, 2564967 - 2565266
Alignment:
| Q |
52 |
gaaatggaacaaatt-ggttagttcagaattgaggcagattgattgtatactaaaagtccacaacatgccaaaaacacttgcatgctttgaagagtatag |
150 |
Q |
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| T |
2564967 |
gaaatggaacaaatttggttagttcagaattgaggcagattgattgtatactaaaagtccacaacatgccaaaaacacttgcatgctttgaagagtatag |
2565066 |
T |
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| Q |
151 |
agaaattgtaaagattaatgccaacaagctgcatgttaatcatccaccttgccttgcagatggaaatgagcttttaatgttccatggtaccaacattgca |
250 |
Q |
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| T |
2565067 |
agaaattgtaaagattaatgccaacaagctgcatgttaatcatccacgttgccttgcagatggaaatgagcttttaatgttccatggtaccaacattgca |
2565166 |
T |
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| Q |
251 |
tgctctcttggcataaataattgttttagcttgtgtgatttagattattgtggtgtatgtcaaattctgaggcacggtttctctactaacatggaatttc |
350 |
Q |
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| T |
2565167 |
tgctctcttggcataaataattcttttagcttgtgtgatttagattattgtggtgtatgtcaaattctgaggcacggtttctctactaacatggaatttc |
2565266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 69 - 350
Target Start/End: Original strand, 2552511 - 2552795
Alignment:
| Q |
69 |
ttagttcagaattgaggcagattgattgtatactaaaagtccacaacatgccaaaaacacttgcatgctttgaagagtatagagaaattgtaaagattaa |
168 |
Q |
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| T |
2552511 |
ttagttctgaattgtggcagattgattgtatcttaaaagtccacaacatgccaaaaacatttcaatgctttgaagagtatagagaaatggtgaagattaa |
2552610 |
T |
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| Q |
169 |
tgccaacaagctgcatgtt---aatcatccaccttgccttgcagatggaaatgagcttttaatgttccatggtaccaacattgcatgctctcttggcata |
265 |
Q |
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| T |
2552611 |
tgccaacaagctacaaattaagaatcatgcacgttgccttgttgatggaaatgagcttttaatgtttcatggcactaacattgcatgctctcttggcata |
2552710 |
T |
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| Q |
266 |
aataattgttttagcttgtgtgatttagattattgtggtgtatgtcaaattctgaggcacggtttctctactaacatggaatttc |
350 |
Q |
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| T |
2552711 |
aatggttcttatagtttatgcactttagactattgtggtgtatgtcaaattttgaggcatggtttttctactaacaaggaatttc |
2552795 |
T |
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