View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_45 (Length: 372)
Name: NF1379_low_45
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 25167599 - 25167860
Alignment:
| Q |
30 |
atgatgatgtgttatattttcttaacgaagccaaaacttctttcacctctggaaaattcaatgacatgaatttcaatgctgctactgtggtgaaagatgc |
129 |
Q |
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| T |
25167599 |
atgatgatgtgttatattttcttaacgaagccaaaacttctttcacctctggaaaattcaatgacatgaatttcaatgctgctactgtggtgaaagatgc |
25167698 |
T |
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| Q |
130 |
tgatcattgtagctcaacggctccggcttcttcgccagtactcaagagtaatgatgatttggaagatgttagtattattattatgattctagctgattat |
229 |
Q |
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| T |
25167699 |
tgatcattgtagctcaacggctccgacttcttcgccagtactcaagagtaatgatgatttggaagatgttagtattattattatgattctagctgattat |
25167798 |
T |
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| Q |
230 |
ttggctggaaaatattagtttatgactttttagttagtcgactaattgtgacgaatttatat |
291 |
Q |
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| T |
25167799 |
ttggctggaaaatattagtttatgactttttagttagtcgactaattgtgatgaatttatat |
25167860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 67 - 251
Target Start/End: Complemental strand, 25161757 - 25161573
Alignment:
| Q |
67 |
ttctttcacctctggaaaattcaatgacatgaatttcaatgctgctactgtggtgaaagatgctgatcattgtagctcaacggctccggcttcttcgcca |
166 |
Q |
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| T |
25161757 |
ttctttcaactctggaaatttcaatggcatgaattccaatgcagctattgttgtgaaagatattgaacattgtggattaaaggctccagattctacccca |
25161658 |
T |
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| Q |
167 |
gtactcaagagtaatgatgatttggaagatgttagtattattattatgattctagctgattatttggctggaaaatattagttta |
251 |
Q |
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| T |
25161657 |
ttacttaagtataatcaacctttggaagatgttactaatattattatgattctagctgattatttggctgggaaatattagttta |
25161573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 55006554 - 55006491
Alignment:
| Q |
188 |
ttggaagatgttagtattattattatgattctagctgattatttggctggaaaatattagttta |
251 |
Q |
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| T |
55006554 |
ttggaagatgttcctaatattattatgattctagctgattatatggctggcaaatattagttta |
55006491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 26302999 - 26303057
Alignment:
| Q |
186 |
atttggaagatgttagtattattattatgattctagctgattatttggctggaaaatat |
244 |
Q |
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| T |
26302999 |
atttggaagttgttggtattactcttgagattcttgctgattatttggctggaaaatat |
26303057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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