View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_46 (Length: 366)
Name: NF1379_low_46
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 51905227 - 51904930
Alignment:
| Q |
22 |
aaagttttaagctgtttttgaattcgagaagtctatgnnnnnnnnnnnnnactacatc--aatatgaaatgacatgtaagtaagctaaatgttatgcttg |
119 |
Q |
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| T |
51905227 |
aaagttttaagctgtttttgaattcgagaagtctatgtttttctttttttactacatcttaatatgaaatgacatgtaagtaagctaaatgttatgcttg |
51905128 |
T |
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| Q |
120 |
aattgtttgtaggcgatgttgaaaattagatcgtataacaaaagagtttggatggaatgtgtggtttttcttaatactacaatatttgtttgatcaccac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51905127 |
aattgtttgtaggcgatgttgaaaattagatcgtataacaaaagagtttggatggaatgtgtggtttttcttaatactacaatatttgtttgatcaccac |
51905028 |
T |
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| Q |
220 |
aataacaaaaaactatttttctttagatgagatttaaatttgaataaaataatccacttgtgtgtcataaattgttatttagttgagattttcctatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51905027 |
aataacaaaaaactatttttctttagatgagatttaaatttgaataaaataatccacttgtgtgtcataaattgttatttagttgagattttcctatg |
51904930 |
T |
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