View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_46 (Length: 366)

Name: NF1379_low_46
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_46
NF1379_low_46
[»] chr1 (1 HSPs)
chr1 (22-317)||(51904930-51905227)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 51905227 - 51904930
Alignment:
Q  22 aaagttttaagctgtttttgaattcgagaagtctatgnnnnnnnnnnnnnactacatc--aatatgaaatgacatgtaagtaagctaaatgttatgcttg 119  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  51905227 aaagttttaagctgtttttgaattcgagaagtctatgtttttctttttttactacatcttaatatgaaatgacatgtaagtaagctaaatgttatgcttg 51905128  T
Q  120 aattgtttgtaggcgatgttgaaaattagatcgtataacaaaagagtttggatggaatgtgtggtttttcttaatactacaatatttgtttgatcaccac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51905127 aattgtttgtaggcgatgttgaaaattagatcgtataacaaaagagtttggatggaatgtgtggtttttcttaatactacaatatttgtttgatcaccac 51905028  T
Q  220 aataacaaaaaactatttttctttagatgagatttaaatttgaataaaataatccacttgtgtgtcataaattgttatttagttgagattttcctatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51905027 aataacaaaaaactatttttctttagatgagatttaaatttgaataaaataatccacttgtgtgtcataaattgttatttagttgagattttcctatg 51904930  T

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