View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_50 (Length: 353)
Name: NF1379_low_50
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 58 - 348
Target Start/End: Complemental strand, 8814592 - 8814305
Alignment:
| Q |
58 |
tgaatgagctagagaaaatgcagctaacaaacacaagagtgttttgttgttgctgacaaaatattatttgtgtcacatcatttgtacatatttttggttt |
157 |
Q |
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| T |
8814592 |
tgaatgagctagagaaaatgtagctaacaaacacaagagtgttttgctgttgctgacaaaatattatttgtgtcacatcatttgtacatatttttggttt |
8814493 |
T |
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| Q |
158 |
gtgttaatgttgttgcccatcttattttcaaatgagctcttcagtttgaattatataatcgaacatagggtatttttcggnnnnnnntatggcgcgtgag |
257 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
8814492 |
gtgttaatgttgttgcccatct--ttttcaaatgagctcttcagtttgaattatataattgaacatagggtattttt-taaaaaaaatatggcgtgtgag |
8814396 |
T |
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| Q |
258 |
aaacttattgagtgaaagcaaaaataatcaaatattttagcctttataagcctcacatcgccgtcacctttcaattcaaagtggactttat |
348 |
Q |
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| T |
8814395 |
aaacttattgggtgaaaacaaaaataatcaaatattttagcctttataagtctcacatcgccgccacctttcaattcaaagtggactttat |
8814305 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 38696408 - 38696374
Alignment:
| Q |
31 |
ctgttgcgaaatagttcgagtaagttttgaatgag |
65 |
Q |
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| T |
38696408 |
ctgttgcgaaatagttcgagtaagttttgaatgag |
38696374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 33327391 - 33327355
Alignment:
| Q |
31 |
ctgttgcgaaatagttcgagtaagttttgaatgagct |
67 |
Q |
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| T |
33327391 |
ctgttgcgaaatagttcgaataagttttgaatgagct |
33327355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 31871973 - 31872009
Alignment:
| Q |
31 |
ctgttgcgaaatagttcgagtaagttttgaatgagct |
67 |
Q |
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| T |
31871973 |
ctgttgcgaaatagttcgaataagttttgaatgagct |
31872009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 18330070 - 18330106
Alignment:
| Q |
31 |
ctgttgcgaaatagttcgagtaagttttgaatgagct |
67 |
Q |
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| T |
18330070 |
ctgttgcgaaatagttcgaataagttttgaatgagct |
18330106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 45222823 - 45222859
Alignment:
| Q |
31 |
ctgttgcgaaatagttcgagtaagttttgaatgagct |
67 |
Q |
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| T |
45222823 |
ctgttgcgaaatagttcgaataagttttgaatgagct |
45222859 |
T |
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