View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_52 (Length: 344)
Name: NF1379_low_52
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_52 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 203 - 344
Target Start/End: Complemental strand, 21111965 - 21111824
Alignment:
| Q |
203 |
aatcaagaccgagaaaaggcctaatggagatcgacataactatcatcatgcattatttggattcagaagatacagttactccgagttgaagatagcaaca |
302 |
Q |
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| T |
21111965 |
aatcaagaccgagaaaaagcctaatggagatcgacataactatcatcatgcattatttggattcagaagatacagttactccgagttgaagatagcaaca |
21111866 |
T |
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| Q |
303 |
aagaatttcagtaatgagattggaagaggtggaggagggatt |
344 |
Q |
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| T |
21111865 |
aagaatttcagtaatgagattggaagaggtggaggagggatt |
21111824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 21112138 - 21111995
Alignment:
| Q |
30 |
aataacttctctaaggaagagtctataagtgtaacagacaatgtttgtttggttcagcttcacaaagactttgttggaaaacaaacaagtcatttgttga |
129 |
Q |
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| T |
21112138 |
aataacttctctaaggaagagtctataagtgtaacagacaatgtttgtttgcttcagcttcacaaagactttgttggaaaacaaacaagtcatttgttga |
21112039 |
T |
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| Q |
130 |
ggttttttatgtggctttcagttacagttggtggcttggaattc |
173 |
Q |
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| T |
21112038 |
agttttttatgtggctttcagttacagttggtggcttggaattc |
21111995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 18659063 - 18658946
Alignment:
| Q |
227 |
tggagatcgacataactatcatcatgcattatttggattcagaagatacagttactccgagttgaagatagcaacaaagaatttcagtaatgagattgga |
326 |
Q |
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| T |
18659063 |
tggagatcaacataactatcatcatgtattattgggattcagaagatatagttactccgagttgaagatagcaacaaagaatttcagtaatgagattgga |
18658964 |
T |
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| Q |
327 |
agaggtggaggagggatt |
344 |
Q |
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| T |
18658963 |
agaggtggaggagggatt |
18658946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 236 - 340
Target Start/End: Complemental strand, 21130892 - 21130788
Alignment:
| Q |
236 |
acataactatcatcatgcattatttggattcagaagatacagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtgga |
335 |
Q |
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| T |
21130892 |
acatagctatcatcttacattattaggattcagaagatacacttactccgagttgaaggtagcgacaaaaaatttcagtaacgagattggaagaggtgga |
21130793 |
T |
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| Q |
336 |
ggagg |
340 |
Q |
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||||| |
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| T |
21130792 |
ggagg |
21130788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 18659260 - 18659127
Alignment:
| Q |
30 |
aataacttctctaaggaagagtctataagtgtaacagacaatgtttgtttggttcagcttcacaaagactttgttggaaaacaaacaagtcatttgttga |
129 |
Q |
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|||||||||||||| ||||||| ||| |||||| ||||| ||||| | || ||||||||||| |||| |||| ||||| ||||||||||||| | | |
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| T |
18659260 |
aataacttctctaaagaagagtatatgagtgtagcagaccgggtttgctctgtgcagcttcacaaggactatgttataaaaccaacaagtcatttggtta |
18659161 |
T |
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| Q |
130 |
ggttttttatgtggctttcagttacagttggtgg |
163 |
Q |
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| T |
18659160 |
ggttttttctgtggctttcaattacaattggtgg |
18659127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 21131082 - 21130956
Alignment:
| Q |
46 |
aagagtctataagtgtaacagacaatgtttgtttggttcagcttcacaaagactttgttggaaaacaaacaagtcatttgttgaggttttttatgtggct |
145 |
Q |
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|||| ||||| ||||||| ||| |||||| |||||| || ||||||||||||| || | |||||||||||||||||||||| || || || ||||||| |
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| T |
21131082 |
aagaatctatgagtgtaaaagatcatgtttctttggtccatcttcacaaagactatgctagaaaacaaacaagtcatttgttcagattgttcttgtggct |
21130983 |
T |
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| Q |
146 |
ttcagttacagttggtggcttggaatt |
172 |
Q |
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| T |
21130982 |
tacaattgtagttggtggtttagaatt |
21130956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 39131850 - 39131949
Alignment:
| Q |
242 |
ctatcatcatgcattatttggattcagaagatacagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtggaggaggg |
341 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
39131850 |
ctatcatcatacattattgggattcagaagatacagttactcggagttgaaggtggcaaccaagaatttcagtaatgagattggaaaaggcggaggaggg |
39131949 |
T |
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