View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_53 (Length: 344)
Name: NF1379_low_53
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 42620540 - 42620855
Alignment:
| Q |
17 |
atgaatttgtcttcctctcacaacatatactattaaggataaggaaacaatta----------------agactgtaat-----tgatcgagcaaaatca |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
42620540 |
atgaatttgtcttcctctcacaacatatactattaaggataaggaaacaattatatataagagattttaagactgtaatgtaattgatcgagcaaaatca |
42620639 |
T |
|
| Q |
96 |
ctttctattggatgagccatgcatttagagatttcactcattaagaatgttgaaaaaagtgtccaatgtgtaggtatacctactacttatgagaatgaca |
195 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42620640 |
ctttctattggaggagccat----ttagagatttcactcattaagaatgttgaaaaaagtgtccaatgtgtaggtatacctactacttatgagaatgaca |
42620735 |
T |
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| Q |
196 |
acatagtctcaaagctgcacaagtaatataggtatgttacgtccacaagnnnnnnnnnnngcaattggattaataagtctcttcatacgtactccctgat |
295 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42620736 |
acgtagtctcaaagctgcacaagtaatataggtatgttacgtccacaagtttttttttttgcaattggattaataagtctcttcatacgtactccctgat |
42620835 |
T |
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| Q |
296 |
agtgatgtaggtgtgagaga |
315 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42620836 |
agtgatgtaggtgtgagaga |
42620855 |
T |
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