View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_56 (Length: 340)
Name: NF1379_low_56
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 43296053 - 43295744
Alignment:
| Q |
1 |
catagttgttaagttgtctataccactgatcaaccttacaagatgagtaaaggatgtgtgtatata--tatatcacaatggaaaacacttaactacccct |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||| |
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| T |
43296053 |
catagttgttaagttgtctataccactgatcaaccttacaagatgagtaaaggatgtgtgtgtatacatatatcacaacggaaaagacttaactacccct |
43295954 |
T |
|
| Q |
99 |
ta-caggtcaaataaataaagtatacatcttaacatcctccataaaacattgagtggaatatcactttgtaaacaaatttgcaatatgcatatggacgaa |
197 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
43295953 |
taacaggtcaaataaataaagtatacatcttaacatcctccataaaaca----gtggaatatcactttgtaaacaaatctgcaatttgcatatggacgaa |
43295858 |
T |
|
| Q |
198 |
gagacaataggtaaattgttatagtgtcacgttgaatgttatcgcttacaatcaatatcaacatgttttgtgtggtagtaaagaattgcattgcgatttg |
297 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43295857 |
gagacaataggtaaattgttatagtgtaatgttgaatgttatcgcttacaatcaatatcaacatgttttgtgtggtagtaaagaattgcattgcgatttg |
43295758 |
T |
|
| Q |
298 |
cgagtgatttgaat |
311 |
Q |
| |
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|||||||||||||| |
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| T |
43295757 |
cgagtgatttgaat |
43295744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 22434790 - 22435097
Alignment:
| Q |
1 |
catagttgttaagttgtctataccactgatcaaccttacaagatgagtaaaggatgtgtgtatatata----tatcacaatggaaaacacttaactaccc |
96 |
Q |
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|||||| |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| | |||||||||| |
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| T |
22434790 |
catagtggttaggttgtttataccattaatcaaccttacaagatgagtaaaggatgtgtgtgtatatacatatatcacaatgaaaaggatttaactaccc |
22434889 |
T |
|
| Q |
97 |
ctta-caggtcaaataaataaagtatacatcttaacatcctccataaaacattgagtggaatatcactttgtaaacaaatttgcaatatgcatatggacg |
195 |
Q |
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|||| || |||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
22434890 |
cttaacaagtcaaataaataaattacacatcttaacatcctgcataaaacatcaagtggaatatcactttgtaaacaaattagcaatttgcatatggacg |
22434989 |
T |
|
| Q |
196 |
aagagacaataggtaaattgttatagtgtcacgttgaatgttatcgc--------ttacaatcaatatcaacatgttttgtgtggtagtaaagaattgca |
287 |
Q |
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||||||||| ||||||||||| ||||||||| |||||| ||||| || | || |||||||||| ||| |||||||||||||||||||||||| |
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| T |
22434990 |
aagagacaaaaggtaaattgtgatagtgtcatgttgaaagttatggccattgaaatgacgatcaatatcatcatactttgtgtggtagtaaagaattgca |
22435089 |
T |
|
| Q |
288 |
ttgcgatt |
295 |
Q |
| |
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|||||||| |
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| T |
22435090 |
ttgcgatt |
22435097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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