View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379_low_57 (Length: 338)
Name: NF1379_low_57
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 42209408 - 42209069
Alignment:
| Q |
1 |
ttggatccataatggatcaatcaaaattacaaatttgtcgcgtaactatttttatggtannnnnnncctaagaggattacaaacatattttctttgaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42209408 |
ttggatccataatggatcaatcaaaattacaaatttgtcgcgtaactatttttatggtatttttttcctaagaggattacaaacatattttctttgaggt |
42209309 |
T |
|
| Q |
101 |
gccatagagagtggctgaccattatttgttgtcggtagaggtctttcttactaatctcggtttagaagaatgagggtt------------tagaagaatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42209308 |
gccatagagagtggctgaccattatttgttgtcggtagaggtctttcttactaatctcggtttagaagaatgagggtttagaggagggtttagaagaatg |
42209209 |
T |
|
| Q |
189 |
aaaaggtgaagatgttcattggatactctcctgtaaaa---cccacaccagagaggatcctcttctcatatataatcatatacctccttaaggagttttg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42209208 |
aaaaggtgaagatgttcattggatactctcctgtaaaacatcccacaccag-gaggatcctcttctcatatataatcatatacctccttaaggagttttg |
42209110 |
T |
|
| Q |
286 |
aatcatttgtttgacaagtaatctctttcccgacatatatt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42209109 |
aatcatttgtttgacaagtaatctctttcccgacatatatt |
42209069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University