View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_6 (Length: 588)
Name: NF1379_low_6
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 100 - 364
Target Start/End: Original strand, 5081224 - 5081488
Alignment:
| Q |
100 |
ggccatgaggttcaattcatggatttgatttctcatagaaagaatttgaatgaaaactttcaagcaatttggttagcatgcattttgtcaatttggaagc |
199 |
Q |
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| T |
5081224 |
ggccatgaggttcaattcatggatttgatttctcagagaaagaatttgaatgaaaactttcaagcaatttggttagcatgcagtttgtcaatttggaagc |
5081323 |
T |
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| Q |
200 |
attgtaactttgtgttgttcgacaatcaggattgcttagctcgtacacctttggacatggtacaaattttggtttggtcatggatcaagtccaaagctaa |
299 |
Q |
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| T |
5081324 |
attgtaactttgtgttgttcgacaatcaagattgcttagctcgtacacatttggacatggtacagattttggtttggtcatggatcaagtctaaagctaa |
5081423 |
T |
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| Q |
300 |
agacttttaggaatcaatggagcactcaacctcttaaatgtctagaattgttatatgtaatgtga |
364 |
Q |
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| T |
5081424 |
agacttttaagaatcaatggagcactcaacctcttaaatgtctagaattgttatatgtaatgtga |
5081488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 5081550 - 5081633
Alignment:
| Q |
428 |
aactttgtaacctttcgttcttaaaattcgttatagtttgatgatgttgtttataacatattatatttttaaccttaacctttt |
511 |
Q |
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| T |
5081550 |
aactttgtaacctttcgatcttagaattcgttatagtttgatgatgttgtttatgacatattatatttttaaccttaacctttt |
5081633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 50976723 - 50976591
Alignment:
| Q |
176 |
catgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgta-cacctttggacatggtacaaattttggttt |
274 |
Q |
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| T |
50976723 |
catgcatttggtcaatttagaagcaccgtaactttgtcatgtttggcaaccatgattgcttagctcgtaacacctttggacattgtacaacttttggttt |
50976624 |
T |
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| Q |
275 |
ggtcatggatcaagtccaaagctaaagactttt |
307 |
Q |
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| T |
50976623 |
ggtcgtggatcaagttcagagttaaagattttt |
50976591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 51079855 - 51079723
Alignment:
| Q |
176 |
catgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgta-cacctttggacatggtacaaattttggttt |
274 |
Q |
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| T |
51079855 |
catgcatttggtcaatttagaagcaccgtaactttgtcatgtttggcaaccatgattgcttagctcgtaacacctttggacattgtacaacttttggttt |
51079756 |
T |
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| Q |
275 |
ggtcatggatcaagtccaaagctaaagactttt |
307 |
Q |
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|||| |||||||||| || || |||||| |||| |
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| T |
51079755 |
ggtcgtggatcaagttcagagttaaagattttt |
51079723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 15287006 - 15286972
Alignment:
| Q |
266 |
ttttggtttggtcatggatcaagtccaaagctaaa |
300 |
Q |
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| T |
15287006 |
ttttggtgtggtcatggatcaagtccaaagctaaa |
15286972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 28412656 - 28412566
Alignment:
| Q |
170 |
ggttagcatgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgtacacctttggacatggt |
260 |
Q |
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| T |
28412656 |
ggttagcatgtatttggacaatttggaagcatcctaattatgtggtgtttaataatcaggattgtttatctcgtacacctttggacatggt |
28412566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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