View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_60 (Length: 326)
Name: NF1379_low_60
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_60 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 36840446 - 36840718
Alignment:
| Q |
27 |
tgcagatgtaaggaaccacccagttataattcactgtaagcgaggaaaggtgagattttgctcgatatttttaactcaccaattattcaatataggaata |
126 |
Q |
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| T |
36840446 |
tgcagatgtaaggaaccacccagttataattcactgtaagcggggaaaggtgagattttgctcgatatttttaactcaccaattattcaatataggaata |
36840545 |
T |
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| Q |
127 |
gataacaaccatctcgttcggaaaatccatattttcccgataaatttgggctaatagggttctattagataggaacagatttgattcaagtttgatacg- |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840546 |
gataacaaccatctcgttcggaaaatccatattttcccgacaaatttgggttaatagggttctattagataggaacagatttgattcaagtttgatacga |
36840645 |
T |
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| Q |
226 |
aannnnnnnnnnctttcaaaactattagattataaatcgaaagagtattttcttgtaaaaataggtaatatct |
298 |
Q |
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| T |
36840646 |
aaaaacaattttttttcaaaactattagattataaaccgaaagagtattttcttgtaaaaataggtaatatct |
36840718 |
T |
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Target: scaffold0055 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 694 - 652
Alignment:
| Q |
169 |
aatttgggctaatagggttctattagataggaacagatttgat |
211 |
Q |
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| T |
694 |
aatttgagccaatagggttccattagataggaacagatttgat |
652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 83841 - 83883
Alignment:
| Q |
169 |
aatttgggctaatagggttctattagataggaacagatttgat |
211 |
Q |
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| T |
83841 |
aatttgagccaatagggttccattagataggaacagatttgat |
83883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 18354453 - 18354411
Alignment:
| Q |
169 |
aatttgggctaatagggttctattagataggaacagatttgat |
211 |
Q |
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| T |
18354453 |
aatttgagccaatagggttccattagataggaacagatttgat |
18354411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 13231173 - 13231215
Alignment:
| Q |
169 |
aatttgggctaatagggttctattagataggaacagatttgat |
211 |
Q |
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|||||| || |||||||||| |||||||||||||||||||||| |
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| T |
13231173 |
aatttgagccaatagggttccattagataggaacagatttgat |
13231215 |
T |
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