View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_63 (Length: 316)
Name: NF1379_low_63
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_63 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 36840439 - 36840718
Alignment:
| Q |
10 |
ataatactgcagatgtaaggaaccacccagttataattcactgtaagcgaggaaaggtgagattttgctcgatatttttaactcaccaattattcaatat |
109 |
Q |
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| T |
36840439 |
ataataatgcagatgtaaggaaccacccagttataattcactgtaagcggggaaaggtgagattttgctcgatatttttaactcaccaattattcaatat |
36840538 |
T |
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| Q |
110 |
aggaatagataacaaccatctcgttcggaaaatccatattttcccgataaatttgggctaatagggttctattagataggaacagatttgattcaagttt |
209 |
Q |
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| T |
36840539 |
aggaatagataacaaccatctcgttcggaaaatccatattttcccgacaaatttgggttaatagggttctattagataggaacagatttgattcaagttt |
36840638 |
T |
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| Q |
210 |
gatacg-aannnnnnnnnnctttcaaaactattagattataaatcgaaagagtattttcttgtaaaaataggtaatatct |
288 |
Q |
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| T |
36840639 |
gatacgaaaaaacaattttttttcaaaactattagattataaaccgaaagagtattttcttgtaaaaataggtaatatct |
36840718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 694 - 652
Alignment:
| Q |
159 |
aatttgggctaatagggttctattagataggaacagatttgat |
201 |
Q |
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| T |
694 |
aatttgagccaatagggttccattagataggaacagatttgat |
652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 83841 - 83883
Alignment:
| Q |
159 |
aatttgggctaatagggttctattagataggaacagatttgat |
201 |
Q |
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| T |
83841 |
aatttgagccaatagggttccattagataggaacagatttgat |
83883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 18354453 - 18354411
Alignment:
| Q |
159 |
aatttgggctaatagggttctattagataggaacagatttgat |
201 |
Q |
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| T |
18354453 |
aatttgagccaatagggttccattagataggaacagatttgat |
18354411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 13231173 - 13231215
Alignment:
| Q |
159 |
aatttgggctaatagggttctattagataggaacagatttgat |
201 |
Q |
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| T |
13231173 |
aatttgagccaatagggttccattagataggaacagatttgat |
13231215 |
T |
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