View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_65 (Length: 307)
Name: NF1379_low_65
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_65 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 45641161 - 45641456
Alignment:
| Q |
12 |
atgaagtcgtttgtggtcttatgttgtatagatagctctggctgcttggaataatcaaagggttttcaatgggaattcccgaggattggcttgaagtgtt |
111 |
Q |
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| T |
45641161 |
atgaagtcgtttgtggtcttatgttgtatagatagctctggctgcttggaataatcaaagggttttcaaggggaattcccgaggattggcttgaagtgtt |
45641260 |
T |
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| Q |
112 |
actggattgagatttgagatgacacgagagagggcgcaagagtctgaaattcctgataatccttaaacgattgatgatgtatgaaaagcattgaagtatg |
211 |
Q |
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| T |
45641261 |
actggattgagatttgagatgacacgagagagggcgcaagagtctgaaattcctgataatccttaaacggttgatgatgtatgaaaagcattgaagtatg |
45641360 |
T |
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| Q |
212 |
cacttcctaataatgtgtcacaacggcgtttgcatactagctattgttctcaccaaacatgctgcatatagtggacgtggcaacattttcatggat |
307 |
Q |
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| T |
45641361 |
cacttcctactaatgtgtcacaacggcgtttgcatactagctattgttctcactaaacatgctgcatatagtggacgtggcaacattttcatggat |
45641456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 45647643 - 45647837
Alignment:
| Q |
23 |
tgtggtcttatgttgtatagatagctctggctgcttggaataatcaaagggttttcaatgggaattcccgaggattggcttgaagtgttactggattgag |
122 |
Q |
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| T |
45647643 |
tgtgatcttatgctgtagacatggctatggctgcttggaataaccaaagggttatcaaagggaatttccgaggactggcttgaagtgttattggattgag |
45647742 |
T |
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| Q |
123 |
atttgagatgacacgagagagggcgcaagagtctgaaattcctgataatccttaaacgattgatgatgtatgaaaagcattgaagtatgcacttcctaat |
222 |
Q |
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| T |
45647743 |
atgacag-----aagagagagagcacaagagtctgaaattcctgataatccttgaatgcttggtgcggtatgaaaaacattgaagtcttcatttcctaat |
45647837 |
T |
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