View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_66 (Length: 305)
Name: NF1379_low_66
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 42080221 - 42080045
Alignment:
| Q |
13 |
aatattatttattttgaataattaagtacacttcatatctatttacctcaataatatatcttttgttatctcaaataagtttatttgttaaaatttagaa |
112 |
Q |
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| T |
42080221 |
aatattatttattttgaataattaagtacacttcatatctatttacctcaataatatatcttttgttatctcaaataaatttatttgttaaaatttagaa |
42080122 |
T |
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| Q |
113 |
gtnnnnnnnnnnnnnnnnnttattatttgatcaataaatttatccgtcttattttgacatatccaatctctataaca |
189 |
Q |
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| T |
42080121 |
gtaaaaaaagttaaaaaaattattatttgatcaataaatttatccgtcttactttgacatattcaatctctataaca |
42080045 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 42080168 - 42080120
Alignment:
| Q |
189 |
atatatcttttgttatctcaaataagtttatttgttaaaatttagaagt |
237 |
Q |
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| T |
42080168 |
atatatcttttgttatctcaaataaatttatttgttaaaatttagaagt |
42080120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 31904668 - 31904743
Alignment:
| Q |
25 |
tttgaataattaagtacacttcatatctatttacctcaataatatatcttttgttatctcaaataagtttatttgt |
100 |
Q |
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| T |
31904668 |
tttgaataaataagtataatttatatttagctaccccaataatatatatttagctatctcaaataagtttatttgt |
31904743 |
T |
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