View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_70 (Length: 292)
Name: NF1379_low_70
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_70 |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0478 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 292
Target Start/End: Original strand, 11857 - 12120
Alignment:
| Q |
29 |
attgaaaaatcactagaccaacgatagaatcgcatcagaccagggttcaattgcacaacccccattgcccaaactctgcgcatatcctccacagtgttga |
128 |
Q |
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| T |
11857 |
attgaaaaatcactagaccaacgatagaatcgcatcagaccaaggttcaattgcacaacccccattgcccaaactctacgcatatcctccacagtgttga |
11956 |
T |
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| Q |
129 |
aatgaaactcaaagaagccctttcctagaggagttatatcccaattatgtatatttggccacatattgctcaattgcagcgttaaagccatagtagataa |
228 |
Q |
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| T |
11957 |
aatgaaactcaaagaagccctttcctagaggagttatatcccaattatgtatatttggccacatattgctcaattgcagctttaaagccataatagataa |
12056 |
T |
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| Q |
229 |
aggagtatcacctctgcgaagtgttaatcttccatgaatgttgctgctacagtcaatgagccca |
292 |
Q |
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| T |
12057 |
aggagtatcacctctgcgaagtgttaaccttccatgaatgttgctgctacagtcaatgagccca |
12120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 26153642 - 26153433
Alignment:
| Q |
32 |
gaaaaatcactagaccaacgatagaatcgcatcagaccagggttcaattgcacaacccccattgcccaaactctgcgcatatcctccacagtgttgaaat |
131 |
Q |
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| T |
26153642 |
gaaaaatcactagaccaacaatagaatagcatcaaaccggggttcaagttcacaacccccattgcccaaactcttcgcatatcctcaacagtattgaaat |
26153543 |
T |
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| Q |
132 |
gaaactcaaagaagccctttcctagaggagttatatcccaattatgtatatttggccacatattgctcaattgcagcgttaaagccatagtagataaagg |
231 |
Q |
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| T |
26153542 |
gaaattcaaaaaagccctttcctagtggagttatatcccaattatgtatgtttggccacaaattactcaattttaacttcaaagccatagtagataaagg |
26153443 |
T |
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| Q |
232 |
agtatcacct |
241 |
Q |
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| T |
26153442 |
ggtatcacct |
26153433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 43688740 - 43688682
Alignment:
| Q |
88 |
ccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagc |
146 |
Q |
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| T |
43688740 |
ccccatagcccaaattttccgcatatcctccactgtgttgaaatggaactcaaagaagc |
43688682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 52314377 - 52314318
Alignment:
| Q |
88 |
ccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagcc |
147 |
Q |
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| T |
52314377 |
ccccatagcccaaattttcctcatatcctccactgtgttgaaatggaactcaaagaagcc |
52314318 |
T |
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