View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_77 (Length: 274)

Name: NF1379_low_77
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_77
NF1379_low_77
[»] chr6 (3 HSPs)
chr6 (6-258)||(32104396-32104648)
chr6 (5-229)||(32087119-32087342)
chr6 (6-224)||(32074802-32075024)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 32104396 - 32104648
Alignment:
Q  6 agtgagatgaatgtataggatgaacattaaaccttaaaatgtaagttgtaattcaatcaatttgattaatcaagcatgtttacaatagaaagaacttaat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32104396 agtgatatgaatgtataggatgaacattaaaccttaaaatgtaagttgtaattcaatcaatttgattaatcaagcatatttacaatagaaagaacttaat 32104495  T
Q  106 aaattataatatcttataaagaaataatattgattcaacttctaaaactacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32104496 aaattataatatcttataaagaaataatattgattcaacttctaaaactacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaa 32104595  T
Q  206 aagtgatacatatttatattattacaaattatggcatatttaaatcatagatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32104596 aagtgatacatatttatattattacaaattatggcatatttaaatcatagatt 32104648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 32087119 - 32087342
Alignment:
Q  5 gagtgagatgaatgtataggatgaacattaaaccttaaaatgtaagttgtaattcaatcaatttgattaatcaagcatgtttacaatagaaagaacttaa 104  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  32087119 gagtgatatgaatgtataagatgaacaataaaccttaaaatgtaagttctaaatcaatcaatttgattaatcaagcatgtttacaatagaaagaactcaa 32087218  T
Q  105 taaattataatatcttataaagaaataatattgattcaacttctaaaactacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaa 204  Q
    ||| || |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32087219 taacttgtaatatctcataaa-aaataatattgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaa 32087317  T
Q  205 aaagtgatacatatttatattatta 229  Q
    || |||||||| |||||||| ||||    
T  32087318 aaggtgatacacatttatatgatta 32087342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 32074802 - 32075024
Alignment:
Q  6 agtgagatgaatgtataggatgaacattaaaccttaaaatgtaagttgtaattcaatcaatttgattaatcaagcatgtttacaatagaaagaacttaat 105  Q
    ||||| |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  32074802 agtgatatgaatgtataggatgaacaataaaccataaaatgttagttgtaaatcaatcaatttgattaat-aagcatgtttacaatagaaagaacttaat 32074900  T
Q  106 aaatta----taatatcttataaagaaataatatt-gattcaacttctaaaactacctgctcttggctttcaccaacaaagcacctgcataaccatcaag 200  Q
    | || |    |||||||| |  || ||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32074901 atataacttgtaatatctcaacaaaaaaaaaaatttgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaag 32075000  T
Q  201 ggaaaaagtgatacatatttatat 224  Q
    |||||| |||||||| ||||||||    
T  32075001 ggaaaaggtgatacacatttatat 32075024  T

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