View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_78 (Length: 271)
Name: NF1379_low_78
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 40682782 - 40682879
Alignment:
| Q |
145 |
gatagtataaacaagggagcatgcatcagttgaacatgacctcacagttaggtcgcatctgagaccatgccttaggtataatgattggtggtcaaaag |
242 |
Q |
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| T |
40682782 |
gatagtataaacaagggagcatgcatcagttgaacatgacctcacagttaggtcgcatctgagaccatgccttaggtataatgattggtggtcaaaag |
40682879 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40682639 - 40682724
Alignment:
| Q |
1 |
ttttcttcatgtttactagtattttaaaagttcaatgcaatattaatgatttatcaataatacacttaattatttattacatattg |
86 |
Q |
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| T |
40682639 |
ttttcttcctgtttactagtattttaaaagttcaatgcaatattaatgatttatcaataatacacttaattatttattacatattg |
40682724 |
T |
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