View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_81 (Length: 262)
Name: NF1379_low_81
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 39751012 - 39750772
Alignment:
| Q |
5 |
aacttaaaaaataatcagacacaagacatgttcaatatacatattataattataatcatactttagtgcagaatatgtacaaataaatatatgaacaacc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751012 |
aacttaaaaaataatcagacacaagacatgttcaatatacatattataattataattatactttagtgcagaatatgtacaaataaatatatgaacaacc |
39750913 |
T |
|
| Q |
105 |
ttaattagaatcttaccacatgttgttttattaaacatattaggaaaaatgttttaaacatcaagaagaattattggtacctgaggaatacaaagactag |
204 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39750912 |
tta----gaatcttaccacatgttgttttattaaacatattaggaaaaatgttttaaacatcaagaagaattattggtacctgaggaatacaaagactag |
39750817 |
T |
|
| Q |
205 |
caatagtgaggccagcaagaaaatctttcctaaacttagcaacag |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39750816 |
caatagtgaggccagcaagaaaatctttcctaaacttagcaacag |
39750772 |
T |
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