View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379_low_82 (Length: 260)
Name: NF1379_low_82
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_82 |
 | |
|
| [»] chr1 (10 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 38 - 260
Target Start/End: Original strand, 10983762 - 10983984
Alignment:
| Q |
38 |
atatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctcttcattatgag |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10983762 |
atatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctcttcattatgag |
10983861 |
T |
|
| Q |
138 |
aaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtaccacattaac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10983862 |
aaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctccacgcaaaaaccaataaggtgtaccacattaac |
10983961 |
T |
|
| Q |
238 |
atggtgaatcctaccaatggtga |
260 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10983962 |
atggtgaatcctaccaatggtga |
10983984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 10914828 - 10915059
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| | || ||||| ||| ||||| ||||||| | |||||| |
|
|
| T |
10914828 |
agaattttcatattgcatccattgtgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaacttaaggaataattctctt |
10914927 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
10914928 |
ttgtatgagaaaatatgtatttttcgagtgatccatttggcatgaattcatatataagaacacgttttgaaccctccacacaaaaaccaataaggtgtgc |
10915027 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggtga |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
10915028 |
cacattaacatggtgaatcctaccgatggtga |
10915059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 11033420 - 11033649
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||| ||| ||||||||||||| | | |||| |
|
|
| T |
11033420 |
agaattttcatatcgcatccattatgcaagtactcaatgcctcgagccactccaagagaaattgaatacaattgttcgcaactcaaggaataattttctt |
11033519 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| | ||| ||||||||||| || ||||| |
|
|
| T |
11033520 |
cattatgagaaaatatgtatttttcgagtgatccatttggcataaattcatatatcagaacacgttttgaaccttccacacaaaaaccaatgagttgtac |
11033619 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
|
|
| T |
11033620 |
cacattaacatggtggatcctaccaatggt |
11033649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 11004893 - 11004664
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| || ||||| || |||||||||||||||| |||||||| ||||||||| || |||||||||| |
|
|
| T |
11004893 |
agaattttcatattgcatccattatgcaagtatgcaatacctcgagctacaccaagagaaatggcatacaattttttacaactcaaagagttactctctt |
11004794 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| || ||||| |
|
|
| T |
11004793 |
caataagagaaaatatgtatttttccagtgatccatttggcatgaattcatatataagagcacgttttgaaccctccacacaaaatccaatgagttgtac |
11004694 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
11004693 |
cacattgacatggtgaatcctaccaatggt |
11004664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 11011129 - 11011358
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| | || ||||| ||| ||||| ||||||| | |||||| |
|
|
| T |
11011129 |
agaattttcatattgcatccatgatgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaacttaaggaataattctctt |
11011228 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| || || || |
|
|
| T |
11011229 |
ttgtatgagaaaatatgtatttttcaagtgatccatttggcatgaattcatatataagaacacgttttgaaccttccacacaaaaaccaatgagctgcac |
11011328 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11011329 |
cacattaacatggtgaatcctaccaatggt |
11011358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 11007967 - 11008196
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| | || ||||| ||| ||||||||||||| | |||||| |
|
|
| T |
11007967 |
agaattttcatattgcatccattgtgcaagtactcaatgccacgagccactccaagtgaaattgaatacaattgttcgcaactcaaggaataattctctt |
11008066 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| | ||| || |||||||| || ||||| |
|
|
| T |
11008067 |
cggtatgagaaaatatgtatttttctagtgatccatttggcataaattcatatatcagaacacgttttgaaccttccacacagaaaccaatgagttgtac |
11008166 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11008167 |
cacattaacatggtgaatcctaccaatggt |
11008196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 11028478 - 11028249
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
11028478 |
agaattttcatattacatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataattactctctt |
11028379 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
|| ||||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||| || |||||||||||| ||| |||||||||| || ||||| |
|
|
| T |
11028378 |
caatatgagaaaatatatatttttcgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtac |
11028279 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
11028278 |
cacattaagatggtgaatcctaccaatggt |
11028249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 10974485 - 10974628
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974485 |
agaattttcatatcacatccattatgaaagtactcaattccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
10974584 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatg |
172 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10974585 |
caatgtgagaaaatatgtatttttccagttacccatttggcatg |
10974628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 10903665 - 10903894
Alignment:
| Q |
29 |
agaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctctt |
128 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| ||| |||||||||||||||||| || || | |
|
|
| T |
10903665 |
agaattttcacattgcatccgttatgcaagtacgcaatgcctcgagccacttcaacagaaatggcatacaacttttcacaactcaaggaaaaacaatcct |
10903764 |
T |
|
| Q |
129 |
cattatgagaaaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctgcacgcaaaaaccaataaggtgtac |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||| || | ||| ||||| |||||||| ||||| |
|
|
| T |
10903765 |
tggtatgagaaaatatgtatttttcaagtgacccatttggcatgaattcatatattagagcacgctttgacccatccacacaaaatccaataagttgtac |
10903864 |
T |
|
| Q |
229 |
cacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
10903865 |
cacattaacgtggtgaatcctaccgatggt |
10903894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 9464534 - 9464583
Alignment:
| Q |
209 |
caaaaaccaataaggtgtaccacattaacatggtgaatcctaccaatggt |
258 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
9464534 |
caaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggt |
9464583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University