View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_87 (Length: 255)
Name: NF1379_low_87
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_87 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 40682369 - 40682608
Alignment:
| Q |
12 |
agcagagagacaacaatgatattttaatgagagacattttttaggagcgaaataaacaattacttactcacaaaagaagagataatgttttgtgagtaga |
111 |
Q |
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| T |
40682369 |
agcagagagacaacaatgatattttaatgagagacattttttaggagcgaaataaacaattacttactcacaaaagaagagataatgttttgtgagtaga |
40682468 |
T |
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| Q |
112 |
aagtgggaattgagccttagtttatataggccacaggtatgtggaaaattgatcaaattgaaaagtcttgttattcattttcacaccatgtctacatttc |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40682469 |
aagtgggaattgagcctta----atataggccacaggtatgtggaaaattgatcaaattgaaaagtcttgttattcattttcacaccatgtctacatttc |
40682564 |
T |
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| Q |
212 |
aacgtcagctttgatgacataaacaaggaaagtgctctatttct |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40682565 |
aacgtcagctttgatgacataaacaaggaaagtgctctatttct |
40682608 |
T |
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