View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_9 (Length: 570)

Name: NF1379_low_9
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_9
NF1379_low_9
[»] chr4 (10 HSPs)
chr4 (48-537)||(47282125-47282599)
chr4 (400-436)||(52726037-52726073)
chr4 (401-436)||(41633381-41633416)
chr4 (398-436)||(18375387-18375425)
chr4 (401-434)||(23348112-23348145)
chr4 (401-436)||(54021241-54021276)
chr4 (401-436)||(54358277-54358312)
chr4 (398-436)||(17847538-17847576)
chr4 (402-436)||(37674000-37674034)
chr4 (401-434)||(41497890-41497923)
[»] chr2 (8 HSPs)
chr2 (399-444)||(35676268-35676313)
chr2 (398-436)||(13686158-13686196)
chr2 (400-436)||(14940985-14941021)
chr2 (401-434)||(24413870-24413903)
chr2 (399-436)||(28429443-28429480)
chr2 (400-436)||(45093147-45093183)
chr2 (401-436)||(2752614-2752649)
chr2 (402-433)||(19899087-19899118)
[»] chr3 (5 HSPs)
chr3 (399-436)||(23642976-23643013)
chr3 (399-436)||(39145416-39145453)
chr3 (401-436)||(34624486-34624521)
chr3 (401-436)||(52546907-52546942)
chr3 (403-436)||(45166391-45166424)
[»] chr1 (10 HSPs)
chr1 (399-436)||(4624503-4624540)
chr1 (399-436)||(16255019-16255056)
chr1 (398-436)||(42480288-42480326)
chr1 (404-436)||(41647392-41647424)
chr1 (402-436)||(47550956-47550990)
chr1 (399-436)||(20809112-20809149)
chr1 (398-434)||(1270338-1270374)
chr1 (404-436)||(9098571-9098603)
chr1 (400-436)||(31032695-31032731)
chr1 (400-436)||(34476064-34476100)
[»] chr8 (10 HSPs)
chr8 (400-436)||(33889013-33889049)
chr8 (401-436)||(41322694-41322729)
chr8 (399-436)||(4824307-4824344)
chr8 (400-436)||(13357628-13357664)
chr8 (399-434)||(2001814-2001849)
chr8 (401-436)||(15561913-15561948)
chr8 (401-436)||(36473048-36473083)
chr8 (401-436)||(37919508-37919543)
chr8 (401-434)||(1416048-1416081)
chr8 (399-436)||(29314164-29314201)
[»] scaffold0339 (1 HSPs)
scaffold0339 (397-436)||(13407-13446)
[»] chr6 (3 HSPs)
chr6 (401-439)||(17366978-17367016)
chr6 (399-431)||(3835318-3835350)
chr6 (401-433)||(7646773-7646805)
[»] chr5 (6 HSPs)
chr5 (398-436)||(4391841-4391879)
chr5 (399-436)||(3456914-3456951)
chr5 (399-436)||(43141517-43141554)
chr5 (399-434)||(32891341-32891376)
chr5 (401-439)||(34286755-34286793)
chr5 (399-436)||(8692673-8692710)
[»] chr7 (2 HSPs)
chr7 (399-436)||(42195542-42195579)
chr7 (400-436)||(23991948-23991984)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 48 - 537
Target Start/End: Complemental strand, 47282599 - 47282125
Alignment:
Q  48 caacttgaccgtcaggagctaccatgcaagtcttttgtannnnnnnnnatgtcacctaaatggacattagtgtaagtcgaaccaatctatgcgggtatga 147  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47282599 caacttgaccgtcaggagctaccatgcaagtcttttgtattttttc--atgtcacctaaatggacattagtgtaagtcgaaccaatctatgcgggtatga 47282502  T
Q  148 gattacgcgtcttcacaagagcataaatcatgttccttacagtgttaggcgtagagctaccaatgagtcggagttgtttcatatgttgattacatcaagt 247  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47282501 gattatgcgtcttcacaagagcataaatcatgttccttacagtgttaggcgtagagctaccaatgagtcggagttgtttcatatgttgattacatcaagt 47282402  T
Q  248 gttgtaatgtgagaaatcaatgtgtatatgtggggaaattacaaggggaaattacaaggggaaatgtatatgtgaatgtctcatcaaaagaataccatgc 347  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||             |||||||||||||||||||| ||||||||||||||    
T  47282401 gttgtaatgtgagaaatcaatgtgtatatatggggaaattacaaggggaaat-------------gtatatgtgaatgtctcatccaaagaataccatgc 47282315  T
Q  348 aacatattgtatgtgatatcataacatacttcaacaagatatgtttttcataaggaaaatgctatttctctagaaaaatagcatcaagatttgttttcaa 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  47282314 aacatattgcatgtgatatcataacatacttcaacaagatatgttttccataagaaaaatgctatttctctagaaaaatagcatcaagatttgttttcag 47282215  T
Q  448 ttggtgtattctagggccatttgcaaccgagaacctttccttaatgtctttccacaaacctcctcagttggttaaaatgtcctcgcccct 537  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47282214 ttggtgtattctaggatcattcgcaaccgagaacctttccttaatgtcttcccacaaacctcctcagttggttaaaatgtcctcgcccct 47282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 52726073 - 52726037
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||||||||||||||    
T  52726073 aggaaaatgctatttctctagaaaaatagcatcaaga 52726037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 436
Target Start/End: Complemental strand, 41633416 - 41633381
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaaga 41633381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 18375387 - 18375425
Alignment:
Q  398 taaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18375387 taaggaaaatgttatttctctagaaaaatagcatcaaga 18375425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 23348112 - 23348145
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    ||||||||||||||||||||||||||||||||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaa 23348145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 54021241 - 54021276
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||| |||||||||||||||||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaaga 54021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Complemental strand, 54358312 - 54358277
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||| |||||||||||||||||||||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaaga 54358277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 17847538 - 17847576
Alignment:
Q  398 taaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  17847538 taaggaaaatgttatttctctcgaaaaatagcatcaaga 17847576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 436
Target Start/End: Original strand, 37674000 - 37674034
Alignment:
Q  402 gaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||| |||||||||||||||||||||||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaaga 37674034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 41497890 - 41497923
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    ||||||||||||||||||| ||||||||||||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaa 41497923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 35676268 - 35676313
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaagatttgtttt 444  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35676268 aaggaaaatgctatttctctagaaaaatagcatcaagatttttttt 35676313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 13686196 - 13686158
Alignment:
Q  398 taaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13686196 taaggaaaatgctatttctctagaaaaatagcatcaaga 13686158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 14940985 - 14941021
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||||||||||||||    
T  14940985 aggaaaatgctatttctctagaaaaatagcatcaaga 14941021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 434
Target Start/End: Complemental strand, 24413903 - 24413870
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    ||||||||||||||||||||||||||||||||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaa 24413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 28429480 - 28429443
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28429480 aaggaaaatgctatttctttagaaaaatagcatcaaga 28429443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 45093147 - 45093183
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||| |||||||||||||||||||||||||||    
T  45093147 aggaaaatgttatttctctagaaaaatagcatcaaga 45093183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 2752614 - 2752649
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaaga 2752649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 433
Target Start/End: Complemental strand, 19899118 - 19899087
Alignment:
Q  402 gaaaatgctatttctctagaaaaatagcatca 433  Q
    ||||||||||||||||||||||||||||||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatca 19899087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 23642976 - 23643013
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23642976 aaggaaaatgctatttctctagaaaaatagcatcaaga 23643013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 39145453 - 39145416
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39145453 aaggaaaatgctatttctctagaaaaatagcatcaaga 39145416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 34624486 - 34624521
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||| |||||||||||||||||||||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaaga 34624521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Complemental strand, 52546942 - 52546907
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||| |||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaaga 52546907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 45166424 - 45166391
Alignment:
Q  403 aaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||| |||||||||||||||||||||||||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaaga 45166391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 4624540 - 4624503
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4624540 aaggaaaatgctatttctctagaaaaatagcatcaaga 4624503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 16255056 - 16255019
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16255056 aaggaaaatgctatttctctagaaaaatagcatcaaga 16255019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 42480326 - 42480288
Alignment:
Q  398 taaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  42480326 taaggaaaatgttatttctctagaaaaatagcatcaaga 42480288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 436
Target Start/End: Complemental strand, 41647424 - 41647392
Alignment:
Q  404 aaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaaga 41647392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 436
Target Start/End: Complemental strand, 47550990 - 47550956
Alignment:
Q  402 gaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||| |||||||||||||||||||||||||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaaga 47550956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 20809149 - 20809112
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||  |||||||||||||||||||||||||||    
T  20809149 aaggaaaattttatttctctagaaaaatagcatcaaga 20809112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 1270374 - 1270338
Alignment:
Q  398 taaggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    |||||||| | ||||||||||||||||||||||||||    
T  1270374 taaggaaactactatttctctagaaaaatagcatcaa 1270338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 436
Target Start/End: Original strand, 9098571 - 9098603
Alignment:
Q  404 aaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||| |||||||||||||||||||||||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaaga 9098603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 31032695 - 31032731
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  31032695 aggaaaatgttatttttctagaaaaatagcatcaaga 31032731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 34476100 - 34476064
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  34476100 aggaaaaggctatttctctagaaaaatagtatcaaga 34476064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 33889049 - 33889013
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||||||||||||||    
T  33889049 aggaaaatgctatttctctagaaaaatagcatcaaga 33889013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 436
Target Start/End: Complemental strand, 41322729 - 41322694
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaaga 41322694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 4824344 - 4824307
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4824344 aaggaaaatgctatttctctagaaaaatagcattaaga 4824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 13357628 - 13357664
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||| |||||||||||||||||||||    
T  13357628 aggaaaatgctatttatctagaaaaatagcatcaaga 13357664  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 2001849 - 2001814
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    |||||||||| |||||||||||||||||||||||||    
T  2001849 aaggaaaatgttatttctctagaaaaatagcatcaa 2001814  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 15561913 - 15561948
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||| |||||||||||||||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaaga 15561948  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 36473048 - 36473083
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaaga 36473083  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 37919508 - 37919543
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||||||| |||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaaga 37919543  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 1416048 - 1416081
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    |||||||| |||||||||||||||||||||||||    
T  1416048 ggaaaatgttatttctctagaaaaatagcatcaa 1416081  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 29314201 - 29314164
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  29314201 aaggaaaatgctatttctctaaaaaaatagtatcaaga 29314164  T

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Target: scaffold0339 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 436
Target Start/End: Complemental strand, 13446 - 13407
Alignment:
Q  397 ataaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  13446 ataaggaaaatgatatttctctagaaaaatagcatcaaga 13407  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 17367016 - 17366978
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaagattt 439  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaaaattt 17366978  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 3835350 - 3835318
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcat 431  Q
    |||||||||| ||||||||||||||||||||||    
T  3835350 aaggaaaatgttatttctctagaaaaatagcat 3835318  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 433
Target Start/End: Original strand, 7646773 - 7646805
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatca 433  Q
    |||||||||||||||||||||||||||| ||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatca 7646805  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 4391841 - 4391879
Alignment:
Q  398 taaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4391841 taaggaaaatgcaatttctctagaaaaatagcatcaaga 4391879  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 3456951 - 3456914
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||| |||||||||||||||||||||    
T  3456951 aaggaaaatgctatttttctagaaaaatagcatcaaga 3456914  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 43141517 - 43141554
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||| |||||||||||||||||||||||||||    
T  43141517 aaggaaaatgttatttctctagaaaaatagcatcaaga 43141554  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 32891376 - 32891341
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaa 434  Q
    |||||||||||||||| |||||||||||||||||||    
T  32891376 aaggaaaatgctatttatctagaaaaatagcatcaa 32891341  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 34286793 - 34286755
Alignment:
Q  401 ggaaaatgctatttctctagaaaaatagcatcaagattt 439  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaaaattt 34286755  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 8692710 - 8692673
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  8692710 aaggaaaatgttatttctctaaaaaaatagcatcaaga 8692673  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 42195579 - 42195542
Alignment:
Q  399 aaggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  42195579 aaggaaaatgttatttctctagaaaaataacatcaaga 42195542  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 23991948 - 23991984
Alignment:
Q  400 aggaaaatgctatttctctagaaaaatagcatcaaga 436  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23991948 aggaaaatgctatttctctagaaacatagtatcaaga 23991984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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