View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1379_low_90 (Length: 253)

Name: NF1379_low_90
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1379_low_90
NF1379_low_90
[»] chr4 (2 HSPs)
chr4 (1-71)||(45641492-45641565)
chr4 (70-119)||(45641672-45641721)
[»] chr6 (2 HSPs)
chr6 (75-119)||(10935811-10935855)
chr6 (75-119)||(16734831-16734875)
[»] chr5 (1 HSPs)
chr5 (75-111)||(11833279-11833315)
[»] chr8 (1 HSPs)
chr8 (76-113)||(4686155-4686192)
[»] chr1 (1 HSPs)
chr1 (75-119)||(3399648-3399692)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45641492 - 45641565
Alignment:
Q  1 tcttggttaagaatatccattagtaacaggcac---aaaagactgaagatagatgcctaaagccagcttcatgt 71  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  45641492 tcttggttaagaatatccattagtaacaggcacaaaaaaagactgaagatagatgcctaaagccagctttatgt 45641565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 45641672 - 45641721
Alignment:
Q  70 gtaccatcatgaaaaatgttactaattatatctagcaacatttgcacaat 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45641672 gtaccatcatgaaaaatgttactaattatatctagtaacatttgcacaat 45641721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 10935855 - 10935811
Alignment:
Q  75 atcatgaaaaatgttactaattatatctagcaacatttgcacaat 119  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  10935855 atcatgaaaaatgttactaattatatccagtaacatttgaacaat 10935811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 16734831 - 16734875
Alignment:
Q  75 atcatgaaaaatgttactaattatatctagcaacatttgcacaat 119  Q
    |||| |||||||||||||||||| || |||||||||||| |||||    
T  16734831 atcaagaaaaatgttactaattaaatttagcaacatttgaacaat 16734875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 11833315 - 11833279
Alignment:
Q  75 atcatgaaaaatgttactaattatatctagcaacatt 111  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11833315 atcatgaaaaatgttattaattatatctagcaacatt 11833279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 4686155 - 4686192
Alignment:
Q  76 tcatgaaaaatgttactaattatatctagcaacatttg 113  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  4686155 tcatgaaaaatgttactaattatatttagcatcatttg 4686192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 3399648 - 3399692
Alignment:
Q  75 atcatgaaaaatgttactaattatatctagcaacatttgcacaat 119  Q
    ||||||||||||||||||||||| || ||| |||||||| |||||    
T  3399648 atcatgaaaaatgttactaattaaatttagtaacatttgaacaat 3399692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University