View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_96 (Length: 251)
Name: NF1379_low_96
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_96 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42035448 - 42035559
Alignment:
| Q |
1 |
aattctttatgaaagatgatacacctcctttcactacaagatcgtatcttcaaattattggatactactataaaggttttaaactactattacttcttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42035448 |
aattctttatgaaagatgatacacctcctttcactacaagatcgtatcttcaaattattggatactactataaaggttttaaactactattacttcttca |
42035547 |
T |
|
| Q |
101 |
aagttctctcat |
112 |
Q |
| |
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|||||||||||| |
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| T |
42035548 |
aagttctctcat |
42035559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 42035623 - 42035723
Alignment:
| Q |
122 |
tctgttccaaggttttcgacaaatttgggggcaagggaaacaacaaaaactgaaattcttgtctttcactaaaccacaatgcaacttgccaacccaagta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42035623 |
tctgttccaaggttttcgacaaatttgggggcaagggacacaacaaaaactgaaattcttgtctttcactaaaccacaatgcaacttggcaacccaagta |
42035722 |
T |
|
| Q |
222 |
c |
222 |
Q |
| |
|
| |
|
|
| T |
42035723 |
c |
42035723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 25395712 - 25395668
Alignment:
| Q |
164 |
acaaaaactgaaattcttgtctttcactaaaccacaatgcaactt |
208 |
Q |
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| T |
25395712 |
acaaaaactgaaattcttgtccctcattaaaccaaaatgcaactt |
25395668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 24785165 - 24785116
Alignment:
| Q |
151 |
ggcaagggaaacaacaaaaactgaaattcttgtctttcactaaaccacaa |
200 |
Q |
| |
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||||||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
24785165 |
ggcaagggacatgacaaaaactgaaattcttgtcgctcactaaaccacaa |
24785116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 7457 - 7493
Alignment:
| Q |
164 |
acaaaaactgaaattcttgtctttcactaaaccacaa |
200 |
Q |
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|||||||||||||||||||||| |||||||| ||||| |
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| T |
7457 |
acaaaaactgaaattcttgtctctcactaaatcacaa |
7493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 48699499 - 48699463
Alignment:
| Q |
164 |
acaaaaactgaaattcttgtctttcactaaaccacaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
48699499 |
acaaaaactgaaattcttgtccctcactaaaccacaa |
48699463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 21098634 - 21098598
Alignment:
| Q |
164 |
acaaaaactgaaattcttgtctttcactaaaccacaa |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |
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|
| T |
21098634 |
acaaaaattgaaattcttgtctctcactaaaccacaa |
21098598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 41934678 - 41934642
Alignment:
| Q |
164 |
acaaaaactgaaattcttgtctttcactaaaccacaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
41934678 |
acaaaaactgaaattcttgtacttcactaaaccacaa |
41934642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 15324258 - 15324222
Alignment:
| Q |
164 |
acaaaaactgaaattcttgtctttcactaaaccacaa |
200 |
Q |
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|||||||||||||| ||| |||||||||||||||||| |
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|
| T |
15324258 |
acaaaaactgaaatacttatctttcactaaaccacaa |
15324222 |
T |
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