View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379_low_97 (Length: 251)
Name: NF1379_low_97
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 3803773 - 3803992
Alignment:
| Q |
14 |
ctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatattgtgctttaaagtattgataagaagaaattaaagaaattgtttaa |
113 |
Q |
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| T |
3803773 |
ctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatattgtgctttaaagtattgataagaa------------attgtttaa |
3803860 |
T |
|
| Q |
114 |
agttacaaaacaatcctttt--ccgtaatataaacgaagaccgagtctgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatca |
211 |
Q |
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|||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3803861 |
agttacaaaacaatccttttatccttaatgtaaatcaagaccgagtctgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatca |
3803960 |
T |
|
| Q |
212 |
gcttatgtagttatttaattctcatattcttc |
243 |
Q |
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|||| |||||||||||||| |||||||||||| |
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| T |
3803961 |
gcttctgtagttatttaatactcatattcttc |
3803992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3812403 - 3812594
Alignment:
| Q |
1 |
ctgaaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatattgtgctttaaagtattgataagaagaaattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||| |
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| T |
3812403 |
ctgaaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgca---------------ctttaaattattgataagaaaa---taa |
3812484 |
T |
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| Q |
101 |
agaaattgtttaaagttacaaaacaatccttttccgtaatataaacgaagaccgagtctgaaaagcaaaaacaatttaaaacataaagttgcaatacaaa |
200 |
Q |
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| T |
3812485 |
agaaattgttttaaattacaaagcaatcattttcatcaatgtaaacaaagaccgagattgaaaagcaaaaacaatttaaaacataaaattgcaatacaaa |
3812584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 4223109 - 4223174
Alignment:
| Q |
4 |
aaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4223109 |
aaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
4223174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3822041 - 3822109
Alignment:
| Q |
1 |
ctgaaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
69 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822041 |
ctgaaaaagaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
3822109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 3914571 - 3914489
Alignment:
| Q |
159 |
tgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatcagcttatgtagttatttaattctcatattct |
241 |
Q |
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| T |
3914571 |
tgaaaagaaaaaataatttaaaacataaatttgcaatacaagttcacatatcagcttatgtagttatttaatactcatattct |
3914489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 4012663 - 4012717
Alignment:
| Q |
116 |
ttacaaaacaatccttttccgtaatataaacgaagaccgagtctgaaaagcaaaa |
170 |
Q |
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|||||||| ||||||||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
4012663 |
ttacaaaataatccttttcctcaatataaaccaagactgagtttgaaaagcaaaa |
4012717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 4012791 - 4012821
Alignment:
| Q |
182 |
cataaagttgcaatacaaattcacatatcag |
212 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4012791 |
cataaagttgcaatacaaattcacatatcag |
4012821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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