View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_high_10 (Length: 256)
Name: NF13800_high_10
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 15618065 - 15618288
Alignment:
| Q |
16 |
atccttgaatgtatttaaattttnnnnnnntatccttgaatgtgttgtctatggtgaattgaattcttaaatgcgtttt-tgttagttagtttagtcatc |
114 |
Q |
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| T |
15618065 |
atccttgaatgtatttaaattttaaaaaaatatccttgaatgtgttgtccatggtgaattgaattcttaaatgcgttttttgttagttagtttagtcatc |
15618164 |
T |
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| Q |
115 |
aaatgcctattctgttaatcaatttagtttataaattccatataaaaagaaaacttaaggnnnnnnnnngtggttgtaatttcaatatattcaaagattt |
214 |
Q |
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| T |
15618165 |
aaatgcctcttccgttaatcaatttagtccgtgaattccatataaaaagaaaacttaagtttttttttttttgttgtaatttcaatatattcaaagattt |
15618264 |
T |
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| Q |
215 |
aagtgacattgtcttacacgtcta |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
15618265 |
aagtgacattgtcttacacgtcta |
15618288 |
T |
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Back To:
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 32732702 - 32732752
Alignment:
| Q |
92 |
ttttgttagttagtttagtcatcaaatgcctattctgttaatcaatttagt |
142 |
Q |
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|||||||||||||||||||| ||||||| | |||||| |||||||||||| |
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| T |
32732702 |
ttttgttagttagtttagtcctcaaatgtgttttctgtcaatcaatttagt |
32732752 |
T |
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