View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_high_2 (Length: 647)
Name: NF13800_high_2
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Complemental strand, 20319000 - 20318547
Alignment:
| Q |
20 |
ttatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaatctagctttc |
119 |
Q |
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| T |
20319000 |
ttatgctatacaaaaaagttgtggtcattttgatgaatatcttcggcaataagctccaatagttattgtgctcttaaacttcgggcgtaatctagctttc |
20318901 |
T |
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| Q |
120 |
cttcatagaatcattggacaaccaccctagtccaccaacttcatgacaacattgtctatgatgaactccaaatcctcctaagttgactggtaagttatag |
219 |
Q |
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| T |
20318900 |
cttcatagaatcattggacaaccaacctagtccaccaacttcatgacaacattgtctatgatgaactcc-aatcctcctaagttgactggtaagttatag |
20318802 |
T |
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| Q |
220 |
ataattccgtcatcttatttttaattcgccattcctataccattccataaaagggttgcatttccaagtttccgatcttctcgaaggtaaagtgaggcac |
319 |
Q |
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| T |
20318801 |
ataattccgtcatcttatttttaattcgccattcc--taccattccataaaagggttgcatttccaagtttccgatcttctctaaggtaaagtgaggcac |
20318704 |
T |
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| Q |
320 |
tatatttgatatggttcaggaatcacacaaggctttcccgatgtacatgttagtaccaatggtcatgggaagagtaaaacatcatgggtctttgagtttt |
419 |
Q |
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| T |
20318703 |
tatatttgatatggttccggaatcacacaaggctttcccgatgtacatgt---taccaatggtcatgggaagagtaaaacatcgtgggtctttgagtttt |
20318607 |
T |
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| Q |
420 |
tctggaacctatacttcaaacactgcacaacaattctttattaatgagacaaattcttca |
479 |
Q |
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| T |
20318606 |
tctggaacctatacttcaaacactgcacaacaattctttattaatgagacaaattcttca |
20318547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 475 - 629
Target Start/End: Complemental strand, 20318526 - 20318372
Alignment:
| Q |
475 |
cttcataatttcttttaggaatttgatacaacaaggactttcttctagcatatccttaatgggcatcttgactttgtaacttgctaagatattgcacagc |
574 |
Q |
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| T |
20318526 |
cttcataatttcttttaggaatttgatacaacaaggactttcttctagcatatccttaatgggcatcttgactttgtaccttgctaagatattgcacagc |
20318427 |
T |
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| Q |
575 |
tcctagaaactttcttgttcatcttctttcttctccttatacttcgtttcttcat |
629 |
Q |
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| T |
20318426 |
tccttgaaactttcttgttcatcttctttcttctccatatgcttcgtttcttcat |
20318372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 24671843 - 24671918
Alignment:
| Q |
19 |
attatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctctt |
94 |
Q |
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| T |
24671843 |
attatgctataccaaaaagatgtggtgattttgacgagtatcttctgcattaagtaccaatagttatcctgctctt |
24671918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 20337212 - 20337122
Alignment:
| Q |
19 |
attatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaa |
109 |
Q |
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||||||||||||| ||||| | |||| ||| |||| ||||||||| ||| || | |||||||||| |||||||||| ||||||| |||| |
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| T |
20337212 |
attatgctatacagaaaagatatggtgattgtgataagtatctttcgcatcaaaccccaatagttaccgtgctcttaatcttcgggggtaa |
20337122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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