View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_high_6 (Length: 381)
Name: NF13800_high_6
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 54478932 - 54478570
Alignment:
| Q |
1 |
actttgatctttaactttgaagtgatcaacttattgtatgcatattatttaaagcaatgctcaaatacaaatatttatactttaaaatattttacaaaaa |
100 |
Q |
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| T |
54478932 |
actttgatctttaactttgaagtgatcaacttattgtatgcatattatttaaagcaatgctcaaatacaaatatttatactttaaaatattttacaaaaa |
54478833 |
T |
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| Q |
101 |
agatttcttcaatgaatttaa---aatatgttacaaaaagctttcttcattgaattatcactgcctccnnnnnnnnnntataattaatatatatttgcat |
197 |
Q |
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| T |
54478832 |
agatttcttcaatgaatttaataaaatatgttacaaaaagctttcttcattgaattatcactgcctccaaaaaaata-tataattaatatatatttgcat |
54478734 |
T |
|
| Q |
198 |
tattttcatgctttaagaacagtttttctttaatattgatgtagtatcgtacattatagaaaataaaataatgactaatttgctcattggacgactaaaa |
297 |
Q |
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| T |
54478733 |
tattttcatgctttaagaacagtttttctttaatattgatgtagtatcgtacattatagaaaataaaataatgactaatttgctcattggacgactaaaa |
54478634 |
T |
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| Q |
298 |
ggtttgtcaaaactagatacacgtacttatgcaaaacttgtggacctgcaatagattgtagttaattg |
365 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54478633 |
ggtttgtcaaaactagatac----acttatgcaaaacttgtggacctgcaatagattgtagttaattg |
54478570 |
T |
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