View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13800_low_1 (Length: 684)
Name: NF13800_low_1
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Complemental strand, 20319000 - 20318547
Alignment:
| Q |
20 |
ttatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaatctagctttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20319000 |
ttatgctatacaaaaaagttgtggtcattttgatgaatatcttcggcaataagctccaatagttattgtgctcttaaacttcgggcgtaatctagctttc |
20318901 |
T |
|
| Q |
120 |
cttcatagaatcattggacaaccaccctagtccaccaacttcatgacaacattgtctatgatgaactccaaatcctcctaagttgactggtaagttatag |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20318900 |
cttcatagaatcattggacaaccaacctagtccaccaacttcatgacaacattgtctatgatgaactcc-aatcctcctaagttgactggtaagttatag |
20318802 |
T |
|
| Q |
220 |
ataattccgtcatcttatttttaattcgccattcctataccattccataaaagggttgcatttccaagtttccgatcttctcgaaggtaaagtgaggcac |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20318801 |
ataattccgtcatcttatttttaattcgccattcc--taccattccataaaagggttgcatttccaagtttccgatcttctctaaggtaaagtgaggcac |
20318704 |
T |
|
| Q |
320 |
tatatttgatatggttcaggaatcacacaaggctttcccgatgtacatgttagtaccaatggtcatgggaagagtaaaacatcatgggtctttgagtttt |
419 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20318703 |
tatatttgatatggttccggaatcacacaaggctttcccgatgtacatgt---taccaatggtcatgggaagagtaaaacatcgtgggtctttgagtttt |
20318607 |
T |
|
| Q |
420 |
tctggaacctatacttcaaacactgcacaacaattctttattaatgagacaaattcttca |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20318606 |
tctggaacctatacttcaaacactgcacaacaattctttattaatgagacaaattcttca |
20318547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 475 - 667
Target Start/End: Complemental strand, 20318526 - 20318334
Alignment:
| Q |
475 |
cttcataatttcttttaggaatttgatacaacaaggactttcttctagcatatccttaatgggcatcttgactttgtaacttgctaagatattgcacagc |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20318526 |
cttcataatttcttttaggaatttgatacaacaaggactttcttctagcatatccttaatgggcatcttgactttgtaccttgctaagatattgcacagc |
20318427 |
T |
|
| Q |
575 |
tcctagaaactttcttgttcatcttctttcttctccttatacttcgtttcttcattatggagtaacttctcaatgatttctagcaccttgatg |
667 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20318426 |
tccttgaaactttcttgttcatcttctttcttctccatatgcttcgtttcttcattatggagtaacttctcaatgatttttagcaccttgatg |
20318334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 24671843 - 24671918
Alignment:
| Q |
19 |
attatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctctt |
94 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||| ||||||||| ||| |||| ||||||||||| ||||||| |
|
|
| T |
24671843 |
attatgctataccaaaaagatgtggtgattttgacgagtatcttctgcattaagtaccaatagttatcctgctctt |
24671918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 20337212 - 20337122
Alignment:
| Q |
19 |
attatgctatacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaa |
109 |
Q |
| |
|
||||||||||||| ||||| | |||| ||| |||| ||||||||| ||| || | |||||||||| |||||||||| ||||||| |||| |
|
|
| T |
20337212 |
attatgctatacagaaaagatatggtgattgtgataagtatctttcgcatcaaaccccaatagttaccgtgctcttaatcttcgggggtaa |
20337122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University