View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_low_3 (Length: 611)
Name: NF13800_low_3
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 12 - 592
Target Start/End: Complemental strand, 45566096 - 45565516
Alignment:
| Q |
12 |
atgaacgaaccgggaagaaagctccaaagtaagtatcaagtttccattgatgaatgtcgggatgagttagatagatttaggggcagcgtgcaagcttccc |
111 |
Q |
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| T |
45566096 |
atgaacgaacggggaagaaagctccaaagtaagtatcgagtttccattgatgaatgtcgggatgagttagagagatttaggggcagcgtgcaagcttccc |
45565997 |
T |
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| Q |
112 |
aaattgggcgctctaaggaggtacatatttgaatgggaggattattggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaagga |
211 |
Q |
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| T |
45565996 |
aaattgcgcgctctaaggaggtacatatttgaatgagaggattattggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaagga |
45565897 |
T |
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| Q |
212 |
tggtgacaccaatgcgcgattctttcaagccatggcgagtgcaaagagatgatgcaatacttttacaaacttgaagaaagatgataggactttggttgtg |
311 |
Q |
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| T |
45565896 |
tggtgataccaatgcgcgattctttcaagccatggcgagtgcaaagagatgatgcaatacttttacaaacttgaagaaagatgataggactttggttgtg |
45565797 |
T |
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| Q |
312 |
gcgcaacatgaactttacgtggttgctagctcctattttatgaattctgcgtgcaaagagatgatgttgggcgaatggatgagaatgtggggtttgcgaa |
411 |
Q |
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| T |
45565796 |
gcgcaacatgaactttacgtggttgctagctcctattttatgaattctgcgtgcaaagagatgatgttcggtgaatggatgagaatgtggggtttgcgaa |
45565697 |
T |
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| Q |
412 |
ttctctaacagatcaaagtttttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaagagagaggagttctatgttcaaatggatg |
511 |
Q |
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| T |
45565696 |
ttctgtaacagatcaaagtttttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaaaagagaggagttccatgttcaaatggatg |
45565597 |
T |
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| Q |
512 |
tccccattgtgaaacaaactatgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatctgtgggatt |
592 |
Q |
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| T |
45565596 |
tccccattgtgaaacaaactatgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatctgtgggatt |
45565516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 8179449 - 8179388
Alignment:
| Q |
156 |
ttggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaaggatggtga |
217 |
Q |
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| T |
8179449 |
ttggcacaagaagaagcgttttggaagcaaagagctaaggtgatttggctgaaggatggtga |
8179388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 545
Target Start/End: Original strand, 45286940 - 45286972
Alignment:
| Q |
513 |
ccccattgtgaaacaaactatgagaacgattgg |
545 |
Q |
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| T |
45286940 |
ccccattgtgaaacaaactacgagaacgattgg |
45286972 |
T |
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