View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_low_5 (Length: 405)
Name: NF13800_low_5
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_low_5 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 80 - 390
Target Start/End: Complemental strand, 7115394 - 7115083
Alignment:
| Q |
80 |
tagtcttggattgtataattcactagtggagagatgttttaacaattgtgtcaaaacattctatcggagttcgttgaacaagctagaggaaacatgtaca |
179 |
Q |
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| T |
7115394 |
tagtcttggattgtataattcactagtggagagatgttttaacaattgtgtcaaaacattctatcggagttcgttgaacaagctagaggaaacatgtaca |
7115295 |
T |
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| Q |
180 |
atgtgctgaaaaatacttgaggctttcatcgcaagtcagcgttaaattttcagatatcaaccaaggagcatctacaacagacaaacaat-ttggaagttg |
278 |
Q |
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| T |
7115294 |
atgtgctgaaaaatacttgaggctttcatcgcaagtcagcgttaaattttcagatatcaaccaaggagcatctacaacagacaaacaatattggaagttg |
7115195 |
T |
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| Q |
279 |
gcattacgttcgggatccaaatataagattcnnnnnnncccggaagggaatgaggttgatttgggaggttgtgatttgggttatttggagggcgagaaat |
378 |
Q |
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| T |
7115194 |
gcattacgttcaggatccaaatataagattcaaaaaaatccggaagggaatgaggttgatttgggaggttgtgatttgggttatttggagggcgagaaat |
7115095 |
T |
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| Q |
379 |
ggttgtattttc |
390 |
Q |
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| T |
7115094 |
ggttgtattttc |
7115083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 81 - 268
Target Start/End: Complemental strand, 7146853 - 7146661
Alignment:
| Q |
81 |
agtcttggattgtataattcactagtggagagatgttttaacaattgtgtcaaaacattctatcggagttcgttgaacaagctagaggaaacatgta--- |
177 |
Q |
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| T |
7146853 |
agtcttaggttgtataattcattagtggagagatgttttaacaattgcgtcagttcattctatcggagttcgttgaacaagccagaggaaacatgtgtcc |
7146754 |
T |
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| Q |
178 |
-ca-atgtgctgaaaaatacttgaggctttcatcgcaagtcagcgttaaattttcagatatcaaccaaggagcatctacaacagacaaacaat |
268 |
Q |
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| T |
7146753 |
tcagatgtgctggaaaatacttgaggttttcatcgcatgtgggcgttaaattctcagatatcaaccaaggagcatctacaacagacaaacaat |
7146661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 7101387 - 7101252
Alignment:
| Q |
180 |
atgtgctgaaaaata-cttgaggctttcatcgcaagtcagcgttaaattttcagatatcaaccaaggagc----atctacaacagacaaacaat-ttgga |
273 |
Q |
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| T |
7101387 |
atgtgctgaaaaataacttgaggctttaatcgcaagtcggccttaaattttcagatatcaaccaaggagcatcgatctacaacagacaaacaatattgca |
7101288 |
T |
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| Q |
274 |
agttggcattacgttcgggatccaaatataagattc |
309 |
Q |
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| T |
7101287 |
agctggcattatgttgaggatccaaatagaagattc |
7101252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 7115497 - 7115416
Alignment:
| Q |
3 |
ctagtaaatctagtgataagttttaactgtatgaac---ttgtattaacgttttctgttgcagtagagattttgttgattta |
81 |
Q |
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| T |
7115497 |
ctagtaaatctagtgataagttttaactgtatgaacttgttgtattatcgttttctgttgcagtagagattttgttgattta |
7115416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 38093068 - 38093010
Alignment:
| Q |
332 |
ggttgatttgggaggttgtgatttgggttatttggagggcgagaaatggttgtattttc |
390 |
Q |
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| T |
38093068 |
ggttgatttgggaggttgtgatttgggtcatttggaggacgataaatggttgtaatttc |
38093010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 7101467 - 7101409
Alignment:
| Q |
90 |
ttgtataattcactagtggagagatgttttaacaattgtgtcaaaacattctatcggag |
148 |
Q |
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| T |
7101467 |
ttgtataattcattagacgagagatgtattaacaattgtgtcaatacattctatcggag |
7101409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 43066 - 43129
Alignment:
| Q |
322 |
aagggaatgaggttgatttgggaggttgtgatttgggttatttggagggcgagaaatggttgta |
385 |
Q |
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| T |
43066 |
aagggattgcggttgatttgggaggttgtgatttgcgtcatttggggggcgataaatggttgta |
43129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 52612922 - 52612851
Alignment:
| Q |
319 |
cggaagggaatgaggttgatttgggaggttgtgatttgggttatttggagggcgagaaatggttgtattttc |
390 |
Q |
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| T |
52612922 |
cggaagggattgaggatgatttgggaggtggtgatttgggttttgtggaaagcgaggaatgatcgtattttc |
52612851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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