View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_low_7 (Length: 367)
Name: NF13800_low_7
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 45374287 - 45373948
Alignment:
| Q |
24 |
tagtatatgtgcacttaatttgtttcttgaacaggtccaaagatgtgcagaagacaagacaatactaataacaacatatgaaggcaaccacaatcaccca |
123 |
Q |
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| T |
45374287 |
tagtatatgtgcactt----tgtttcttgaacaggtccaaagatgtgcagaagacaagacaatactaataacaacatatgaaggcaaccacaatcaccca |
45374192 |
T |
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| Q |
124 |
ctcccaccagctgcaactgccatagcacacacaacatcagcagctgcagcaatgctgctatcaagttcaacctcatcaacactaagaaaggaatcagcaa |
223 |
Q |
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| T |
45374191 |
ctcccaccagctgcaactgccatagcacacacaacatcagcagctgcagcaatgctgctatcaagttcaacctcatcaacactaagaaaggaatcagcaa |
45374092 |
T |
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| Q |
224 |
caggatatttatctaattcatttccctatgcaacaatcgcaacctcaaccctatcagcttctcagcccttcccaacaatcaccctcgacttcacacaaaa |
323 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374091 |
caggttatttatctaattcatttccctatgcaacaatggcaacctcaaccctatcagcttctcagcccttcccaacaatcaccctcgacttcacacaaaa |
45373992 |
T |
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| Q |
324 |
ccataacctctccatgcatcataaccgagttcctctaccattgt |
367 |
Q |
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| T |
45373991 |
ccataacctctccatgcatcataaccgagttcctctaccattgt |
45373948 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 37054012 - 37054065
Alignment:
| Q |
54 |
acaggtccaaagatgtgcagaagacaagacaatactaataacaacatatgaagg |
107 |
Q |
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| T |
37054012 |
acaggtacaaaggtgtgctgaagacaaaacaatacttatcacaacatatgaagg |
37054065 |
T |
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