View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13800_low_8 (Length: 330)
Name: NF13800_low_8
Description: NF13800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13800_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 12945540 - 12945853
Alignment:
| Q |
17 |
atcaaccgaggcaacaatggcaggaatttgagcagctaatgtagagcagggatggtggaaaatgagcgaggaagggtggtagaggatgaaaccaccacca |
116 |
Q |
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| T |
12945540 |
atcaacggaggcaacaatggcaggaatttgagcagctaatgtagagcaggggtggtggaaaatgagcgaggaagggtggtagaggatgaaaccaccacca |
12945639 |
T |
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| Q |
117 |
tggaagtagagaataatggggagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaatggaggttttcgcagcggcgtttaagggaa |
216 |
Q |
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| T |
12945640 |
tggaagtagagaataatggggagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaatggaggttttcgcagcggcgtttaagggaa |
12945739 |
T |
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| Q |
217 |
tgtccttagagagagccggttgcggtggcgaattagtgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagtt |
316 |
Q |
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| T |
12945740 |
tgtctttagagagagccggttgcagtggcgaattagtgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagtt |
12945839 |
T |
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| Q |
317 |
gagtttgattttga |
330 |
Q |
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| T |
12945840 |
gagtttgattttga |
12945853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 12937938 - 12938044
Alignment:
| Q |
87 |
gaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggggagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaa |
186 |
Q |
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| T |
12937938 |
gaaggatggtagcggaagaaaccaccaccatggaagtagagaatgagagggagcttagccgcggaagaaggtggtggagggtttgggaggaagatgcgga |
12938037 |
T |
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| Q |
187 |
tggaggt |
193 |
Q |
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| T |
12938038 |
tggaggt |
12938044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 12938092 - 12938166
Alignment:
| Q |
253 |
tgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattt |
327 |
Q |
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| T |
12938092 |
tgggatcggaggatggtggcacggtagggacgttgtcgtttcttgtgagggaaccatcagggttgagtttgattt |
12938166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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