View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13801_low_3 (Length: 409)
Name: NF13801_low_3
Description: NF13801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13801_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 124 - 406
Target Start/End: Complemental strand, 27612831 - 27612543
Alignment:
| Q |
124 |
atcatccatggatgttaacaaactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgc |
223 |
Q |
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| T |
27612831 |
atcatccatggatgttaacaaactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgc |
27612732 |
T |
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| Q |
224 |
aaccacagtctcaaaccacctaca------tctttatcttcagcttcatcacttcgttctcgaaataaacggaacaagttagggctcctccggcgtcatt |
317 |
Q |
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| T |
27612731 |
aaccacagtctcaaaccacctacatcttcatcttcatcttcagcttcatcacttcgttctccaaataaacggaacaagttaggacttcttcgtcttcatt |
27612632 |
T |
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| Q |
318 |
ccccgcgggttgtattcaaagctgctttaaacgctcaacttattgttgtggtattcgatgttgcttgatctgctgtttctgggattcat |
406 |
Q |
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| T |
27612631 |
ctccgcggtttgtattcaaagctgctttaaactctcaacttattgttgttgttgtcgttgttactttatctgctgtttcttggattcat |
27612543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 27612956 - 27612922
Alignment:
| Q |
8 |
catcatcagcaacaactagtttctctacctctggt |
42 |
Q |
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| T |
27612956 |
catcatcagcaacaactagtttctctacctctggt |
27612922 |
T |
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