View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13801_low_4 (Length: 376)
Name: NF13801_low_4
Description: NF13801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13801_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 31647909 - 31648251
Alignment:
| Q |
18 |
actaaatgcctcttctgcaagcccatgatgcgcatacccaacaatcatagaattccacgtcacaacatccttactcaccatgttttcaaatatgtacaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31647909 |
actaaatgcctcttctgcaagcccatgatgcgcataccga-caatcatagaattccacgtcacaacatccttactcaccatgttttcaaatatgtacaaa |
31648007 |
T |
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| Q |
118 |
gcatcatcaattaccccacatttggaatacatagcaataagagcattttcaacatgaagataacaatgaaaacccatttgaattatctgacaatgaacac |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31648008 |
gcatcaacaattaccccacatttggaatacatagcaataagagcattttcaacatgaagataacaatgaaaacccatttgaattatctgacaatgaacac |
31648107 |
T |
|
| Q |
218 |
ctctcccatgtccaagtgctccactacccatacaagcactaagcagactcgtataagtaaaataatttggcttcaattccaaacccctcatccgatgaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31648108 |
ctctcccatgtccaagtgctccactacccatacaagcactaagcagactcgtataagtaaaataatttggcttcaattccaaacccctcatccgacgaaa |
31648207 |
T |
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| Q |
318 |
aagctccaaacacatatcaacacgccattcctgcgcaaacccag |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31648208 |
aagctccaaacacatatcaacacgccattcctgcgcaaacccag |
31648251 |
T |
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